View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17123_low_18 (Length: 370)
Name: NF17123_low_18
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 3753439 - 3753089
Alignment:
| Q |
1 |
acaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatacaatctcagaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3753439 |
acaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggaaaatggattggatacaatctcagaacca |
3753340 |
T |
|
| Q |
101 |
tcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcgtcgaaagaagaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3753339 |
tcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcgtcgaaagaagaca |
3753240 |
T |
|
| Q |
201 |
aagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttacaaaagggcttcctctaactaaaaagaatcttagatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3753239 |
aagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttataaaagggcttcctctaactaaaaagaatcttagatt |
3753140 |
T |
|
| Q |
301 |
tgaagagggaatgtcgagagtcacaccaagatcactataggatgagataac |
351 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3753139 |
tgaagagggaatgtcaagagtcacaccaagatcactatatgatgagataac |
3753089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 4046799 - 4047149
Alignment:
| Q |
1 |
acaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatacaatctcagaacca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| || ||||| || |||||| || ||||||| ||||||| |||| || ||| |||||| |
|
|
| T |
4046799 |
acaagagctaaatttatcaagaattttctcaccattggaatcaggaacaaccgcgatacgaataataccggaaaatggaccggatttaacctcggaacca |
4046898 |
T |
|
| Q |
101 |
tcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcgtcgaaagaagaca |
200 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||| ||||| | || || | ||||| |
|
|
| T |
4046899 |
tcatggttgaagttgattggtgaagaagtgtatatgatccatgtctgattgttattgagttgaagggtatatttggtttttttcttatcaaatggagaca |
4046998 |
T |
|
| Q |
201 |
aagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttacaaaagggcttcctctaactaaaaagaatcttagatt |
300 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || |
|
|
| T |
4046999 |
aagaaattatactatgaattgttgtgattgaaagaggtattggttttgtaactgaagcagttaaaaaagggcttcctctaaccaaaaagaatcttaggtt |
4047098 |
T |
|
| Q |
301 |
tgaagagggaatgtcgagagtcacaccaagatcactataggatgagataac |
351 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4047099 |
tgaagagggaatatcaagagtcacaccaagatcactataagatgaaataac |
4047149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University