View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_19 (Length: 358)
Name: NF17123_low_19
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 5951647 - 5951298
Alignment:
| Q |
1 |
acgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtgagtgtactaaccc |
100 |
Q |
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| T |
5951647 |
acgaagaagaatacaatgaacttgttgatgtgtactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtgagtgtactaaccc |
5951548 |
T |
|
| Q |
101 |
agcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaataatatataagtattttttctat |
200 |
Q |
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| T |
5951547 |
ggcacaaatatacaagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaataatatataagtattttttctat |
5951448 |
T |
|
| Q |
201 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggag |
300 |
Q |
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| T |
5951447 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgagagtttattggaaaatgcctagtaaatgcagcaaggag |
5951348 |
T |
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| Q |
301 |
accatcagcaaaagaactgttgcatgatccatttcttgtgtctgatgatg |
350 |
Q |
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| T |
5951347 |
accatcagcaaaagaactgttgcatgatccatttcttgtgtctgatgatg |
5951298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 31951784 - 31951650
Alignment:
| Q |
1 |
acgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtgagtgtactaaccc |
100 |
Q |
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| T |
31951784 |
acgaggaagaatacaatgaacttgctgatgtttactcatttggcatgtgtgtattggaaatgctcacatctgattatccatatagtgaatgtactaatcc |
31951685 |
T |
|
| Q |
101 |
agcgcaaatatacaagaaagtgacatcggtaaatt |
135 |
Q |
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| T |
31951684 |
agcacagatatacaagaaagtgacatcggtaaatt |
31951650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 28188595 - 28188708
Alignment:
| Q |
6 |
gaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtgagtgtactaacccagcgc |
105 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| | | ||| |||||||||||| ||||| | ||| |
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| T |
28188595 |
gaagaatacaatgaacttgttgatgtgtactcatttggcatgtgtgctttggaaattattacatattattgtccttatagtgagtgtgctaacacggcgt |
28188694 |
T |
|
| Q |
106 |
aaatatacaagaaa |
119 |
Q |
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| |||||||||||| |
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| T |
28188695 |
agatatacaagaaa |
28188708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 28153837 - 28153921
Alignment:
| Q |
201 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagt |
285 |
Q |
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|||| |||||||| |||| ||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
28153837 |
cttttaatgttcaaggtatgctaccagcaacacttttctgatttgaagatgcaaaagcattggagtttattggaaaatgcctagt |
28153921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 28507834 - 28507736
Alignment:
| Q |
52 |
ttttggaaattatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtttaa |
150 |
Q |
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|||||||||| || ||||| ||||||| ||||||||| ||||| || | || || |||||||||||||||| |||| | ||||| ||| ||||||||| |
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| T |
28507834 |
ttttggaaatgattacatctgactatctatatagtgaatgtacagactcggcacatatatacaagaaagtgaaatcgtttaattacgaatttggtttaa |
28507736 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 36630201 - 36630146
Alignment:
| Q |
6 |
gaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaat |
61 |
Q |
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|
||||||||||||||||||||||| || || || |||||||||||| | |||||||| |
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| T |
36630201 |
gaagaatacaatgaacttgttgacgtatattcctttggcatgtgtatcttggaaat |
36630146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 343
Target Start/End: Complemental strand, 22396679 - 22396537
Alignment:
| Q |
201 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggag |
300 |
Q |
| |
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|||| ||||||||| |||||||||||| | ||||| ||| || |||||||| |||| ||| |||||||||| |||||||||||| || |||| || | |
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| T |
22396679 |
cttttaatgttcagtgtaagctaccagaagcacttatcctgatagaagatgccgaagtacgagagtttattgaaaaatgcctagtgaaagcagtaaaaaa |
22396580 |
T |
|
| Q |
301 |
accatcagcaaaagaactgttgcatgatccatttcttgtgtct |
343 |
Q |
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||| | |||||| ||||| ||||||||||||||||||||||| |
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| T |
22396579 |
acctttggcaaaataactgctgcatgatccatttcttgtgtct |
22396537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 22396811 - 22396747
Alignment:
| Q |
83 |
tagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtt |
147 |
Q |
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||||||||||||| ||||||| | ||| ||||||||||||||||||||||| ||| ||||||| |
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| T |
22396811 |
tagtgagtgtactgacccagctctgttattcaagaaagtgacatcggtaaattcagatcttggtt |
22396747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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