View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_22 (Length: 318)
Name: NF17123_low_22
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_22 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 33138921 - 33139216
Alignment:
| Q |
20 |
ttatttaaactttatagtataaaataactaatagtacatttatattgtataatgatggcagatgtcatgcaaggcaccaggtgaggaaatagcttacaaa |
119 |
Q |
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| T |
33138921 |
ttatgtaaactttatagtttaaaataactgata---catttatattttatgaatatggcagatgtcatgcaaagcaccaggtgaggaaatagcatacaaa |
33139017 |
T |
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| Q |
120 |
acaacattagcaatcctaaaaaagttgtcaaactattcatgggttgcaaaaggagtgcttactctttctgcttttgctcttgagtatggagatttctggc |
219 |
Q |
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| T |
33139018 |
acaacactagcaatcctaaaaaagctgtcaaactattcatgggttgcaaaaggagtgcttactctttctgctttttcccttgagtatggagagttctggc |
33139117 |
T |
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| Q |
220 |
tattgtcacagaatctacgaacagaaccactcgccaaatcactaggcataatcaagagagttcctcaactttcaaagccggaagcattgaaaaaacatc |
318 |
Q |
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| T |
33139118 |
tgttatcacagaatctaccaacagaaccacttgccaaatcactaggcataatcaagagagttcctcaactttcaaagccggaagcattgaaaaaacatc |
33139216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 33157385 - 33157612
Alignment:
| Q |
62 |
tattgtataatgatggcagatgtcatgcaaggcaccaggtgaggaaatagcttacaaaacaacattagcaatcctaaaaaagttgtcaaactattcatgg |
161 |
Q |
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| T |
33157385 |
tattgtataatggttgtagatggcatgcaaggccccaggtgaggaaattgcatacagaacaacactagcaatcctgaacaagctgtcaaactactcatgg |
33157484 |
T |
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| Q |
162 |
gttgcaaaaggagtgcttactctttctgcttttgctcttgagtatggagatttctggctattgtcacagaatctacgaacagaaccactcgccaaatcac |
261 |
Q |
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| T |
33157485 |
gttgcaaaaggagttctcactctttctgcttttgctcttgagtatggagagttttggctgctatcacagtatctaccaacagaaccacttgccaaatcat |
33157584 |
T |
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| Q |
262 |
taggcataatcaagagagttcctcaact |
289 |
Q |
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| T |
33157585 |
tagccattatgaagagagtacctcaact |
33157612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 33180200 - 33180427
Alignment:
| Q |
62 |
tattgtataatgatggcagatgtcatgcaaggcaccaggtgaggaaatagcttacaaaacaacattagcaatcctaaaaaagttgtcaaactattcatgg |
161 |
Q |
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| T |
33180200 |
tattgtatgatggtggcagatggcatgcaaggctccaggtgaggaaattgcatacaaaacaacactagcaatcttgaacaagctgtcaaactattcatgg |
33180299 |
T |
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| Q |
162 |
gttgcaaaaggagtgcttactctttctgcttttgctcttgagtatggagatttctggctattgtcacagaatctacgaacagaaccactcgccaaatcac |
261 |
Q |
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| T |
33180300 |
gttgcaaaaggagttctcactctttctgcttttgctcttgaatatggtgacttctggctgctatcacagtatctaccaacagaaccacttgccaaatctt |
33180399 |
T |
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| Q |
262 |
taggcataatcaagagagttcctcaact |
289 |
Q |
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| T |
33180400 |
tggccataatgaagagagtgcctcaact |
33180427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 318
Target Start/End: Complemental strand, 33289883 - 33289642
Alignment:
| Q |
77 |
gcagatgtcatgcaaggcaccaggtgaggaaatagcttacaaaacaacattagcaatcctaaaaaagttgtcaaactattcatgggttgcaaaaggagtg |
176 |
Q |
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| T |
33289883 |
gcagatgtcatgcaaggctccgggtgagaaaattgcttacgaaacaacactaacaatcctgaaaaagctctcaaacaatttatgggttgaaaaaggagtg |
33289784 |
T |
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| Q |
177 |
cttactctttctgcttttgctcttgagtatggagatttctggctattgtcacagaatctacgaacagaaccactcgccaaatcactaggcataatcaaga |
276 |
Q |
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| T |
33289783 |
ctaactctttctgcttttgctattgaatatggtgagttctggaatctatcacaacatctaccaacagaaccacttgccaaatcattagccataatgaaaa |
33289684 |
T |
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| Q |
277 |
gagttcctcaactttcaaagccggaagcattgaaaaaacatc |
318 |
Q |
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| T |
33289683 |
gagtgcctcaactcaccaaaactgaagcactgaaaaaacatc |
33289642 |
T |
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