View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17123_low_25 (Length: 312)

Name: NF17123_low_25
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17123_low_25
NF17123_low_25
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-226)||(31213-31438)
[»] chr8 (2 HSPs)
chr8 (98-225)||(26161662-26161789)
chr8 (1-70)||(26161790-26161859)
[»] chr1 (2 HSPs)
chr1 (216-294)||(26317109-26317187)
chr1 (1-70)||(36386720-36386789)
[»] chr7 (2 HSPs)
chr7 (118-189)||(9416063-9416134)
chr7 (140-208)||(1322924-1322992)
[»] chr3 (2 HSPs)
chr3 (118-193)||(27758850-27758925)
chr3 (245-282)||(1208298-1208335)


Alignment Details
Target: scaffold0054 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31438 - 31213
Alignment:
Q  1 tacaatcacaatcctcttcacataaatcattccacatatcagcttcatacaaaaatatcatataaaacattataaacagtcacttttataaa-ggttaaa 99  Q
    ||||||||||||  |||||||||||||||||| || |  |||||| ||||| ||||||| ||||||||||||  |||||||||||||||||| |||||||    
T  31438 tacaatcacaattatcttcacataaatcattcgacgtcgcagctttatacataaatatcctataaaacattaacaacagtcacttttataaaaggttaaa 31339  T
Q  100 tattacaatccaagtttctattttaatttcatttccattcaacaacaattatgaaccatactctttaattcataatacctaaccattagttacagttaca 199  Q
    |||||| || | | |||| ||||||||||||||| |||||||||||||||||||| ||| |||||||| | ||||||| |||||| ||||||||||||      
T  31338 tattaccattcca-tttcaattttaatttcattttcattcaacaacaattatgaatcatgctctttaaattataatacgtaaccactagttacagttatg 31240  T
Q  200 ataagtatgaggaagcgcccttacctt 226  Q
    ||||| ||| ||||| |||||||||||    
T  31239 ataagcatggggaagtgcccttacctt 31213  T

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Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 26161789 - 26161662
Alignment:
Q  98 aatattacaatccaagtttctattttaatttcatttccattcaacaacaattatgaaccatactctttaattcataatacctaaccattagttacagtta 197  Q
    ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26161789 aatattacaatacaagtttctattttaatttcatttccctttaacaacaattatgaaccatactctttaaatcataatacctaaccattagttacagtta 26161690  T
Q  198 caataagtatgaggaagcgcccttacct 225  Q
      ||||||||| ||||||||||||||||    
T  26161689 tgataagtatggggaagcgcccttacct 26161662  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26161859 - 26161790
Alignment:
Q  1 tacaatcacaatcctcttcacataaatcattccacatatcagcttcatacaaaaatatcatataaaacat 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  26161859 tacaatcacaatcctcttcacataaatcattccacatatcagcttcatgcataaatatcatataaaacat 26161790  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 26317187 - 26317109
Alignment:
Q  216 gcccttaccttatggtacttttcagttgaaagacgtccctaagattgattttgaaccaaaagcacgagcacgtcctaag 294  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  26317187 gcccttaccttatggtgcttttccgttgaaagacgtccctaagattgattctaaaccaaaagcacgagcacgtcctaag 26317109  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36386720 - 36386789
Alignment:
Q  1 tacaatcacaatcctcttcacataaatcattccacatatcagcttcatacaaaaatatcatataaaacat 70  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36386720 tacaatcacaatcatcttcatataaatcattccacatatcagcttcatacataaatatcatataaaacat 36386789  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 9416063 - 9416134
Alignment:
Q  118 tattttaatttcatttccattcaacaacaattatgaaccatactctttaattcataatacctaaccattagt 189  Q
    ||||||||||| |||||  ||||||||||||||||||  ||||||||||| ||||||||| |||||| ||||    
T  9416063 tattttaattttatttctcttcaacaacaattatgaattatactctttaaatcataatacataaccaatagt 9416134  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 1322924 - 1322992
Alignment:
Q  140 aacaacaattatgaaccatactctttaattcataatacctaaccattagttacagttacaataagtatg 208  Q
    ||||||| ||||||| |||||||||||| | |||| ||||||| |||||||||| |||  |||||||||    
T  1322924 aacaacagttatgaatcatactctttaaattataacacctaacaattagttacaattatgataagtatg 1322992  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 27758925 - 27758850
Alignment:
Q  118 tattttaatttcatttccattcaacaacaattatgaaccatactctttaattcataatacctaaccattagttaca 193  Q
    ||||||||||| |||||  || | |||||||||||||   |||||||||| | |||||||||||||||||||||||    
T  27758925 tattttaattttatttctctttatcaacaattatgaattgtactctttaaattataatacctaaccattagttaca 27758850  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 1208335 - 1208298
Alignment:
Q  245 aagacgtccctaagattgattttgaaccaaaagcacga 282  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1208335 aagacgtccctaagattgattttgaaccaaatgcacga 1208298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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