View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_27 (Length: 300)
Name: NF17123_low_27
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 278
Target Start/End: Original strand, 31042526 - 31042773
Alignment:
| Q |
29 |
agtaatttcatggtcggtgataatttttatggttggtgataattttccatcatcaatccgtatgtcacgtcatttaaaatatgtcaatcactgattcaaa |
128 |
Q |
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| T |
31042526 |
agtaatttcagggtgggtgataatttttatggttggtgataattttccatcatcaatccgaatgtcacgtcatttaaaatatgtcaatcagtgattcaaa |
31042625 |
T |
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| Q |
129 |
gttgaaagatatgaaaaataatggagcaaaactatgtggatttcaaatttggagttgtctttttatattttagtatagaagtattgaagaaagagttatg |
228 |
Q |
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| T |
31042626 |
gttgaaagatatgaaaaa--atggagtaaaactatgtggatttcaaatttggagttgtctttttatattttagtatagaagtattgaagaaagagttatg |
31042723 |
T |
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| Q |
229 |
ttattaaggataagtttgaaccataaaaatattcaagttaaacgggtaga |
278 |
Q |
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| T |
31042724 |
ttattaaggataagtttgaaccataaaaatattcaagttaaacgggtaga |
31042773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 31037739 - 31037839
Alignment:
| Q |
176 |
tttggagttgtctttttatattttagtatagaagtattgaagaaagagttatgttattaaggataagtttgaaccataaaaatattcaagttaaacgggt |
275 |
Q |
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| T |
31037739 |
tttggagttgtctttttatatgatagtatagaagtattgaagaaa-aaatatgttattaaggataggtttggcccataaaaatattcaactaaaatgggt |
31037837 |
T |
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| Q |
276 |
ag |
277 |
Q |
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|| |
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| T |
31037838 |
ag |
31037839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 39139432 - 39139460
Alignment:
| Q |
87 |
cgtatgtcacgtcatttaaaatatgtcaa |
115 |
Q |
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| T |
39139432 |
cgtatgtcacgtcatttaaaatatgtcaa |
39139460 |
T |
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