View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_33 (Length: 251)
Name: NF17123_low_33
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28189693 - 28189458
Alignment:
| Q |
1 |
catacaatgtcatgtcattttaaataacttgatttaacatcactaccaaccaaccaaaacaaagcaataagccttaataaaccacccttcaaacaaaggt |
100 |
Q |
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| T |
28189693 |
catacaatttcatgtcattttaaataacttgatttaacatcactaccaaccaa----aacaaagcaataagccttaataaaccacccttcaaacaaaggt |
28189598 |
T |
|
| Q |
101 |
tgaataaaccatttttgacaaaagtaatgcttaaataaaggaaataaaaaatagagacatgaaattcaattttgttattttcaacgtagtttcaaaacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28189597 |
tgaataaaccatttttgacaaaagtaatgcttaaataaaggaaataaaaaatagagacatgaaattcaattttgttattttcaacatagtttcaaaacac |
28189498 |
T |
|
| Q |
201 |
atttacatcaatttttcatgatgaatgaattatccttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
28189497 |
atttacatcaatttttcatgatgaatgaattatccttcat |
28189458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 18476184 - 18476128
Alignment:
| Q |
15 |
tcattttaaataacttgatttaacatcactaccaaccaaccaaaacaaagcaataag |
71 |
Q |
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| T |
18476184 |
tcattttaaataatttggtttaacaccactaccaaccaaccaaaacaaagcaataag |
18476128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19540693 - 19540763
Alignment:
| Q |
1 |
catacaatgtcatgtcattttaaataacttgatttaacatcactaccaaccaaccaaaacaaagcaataag |
71 |
Q |
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||||||||| || |||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||| |
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| T |
19540693 |
catacaatgccacgtcattttaaataatttggcttaataccactaccaaccaaccaaaacaaagcaataag |
19540763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 18476130 - 18476007
Alignment:
| Q |
96 |
aaggttgaataaaccatttttgacaaaagtaatgcttaaataaaggaaataaaaaatagagacatgaaattcaattttgttattttcaacgtagtttcaa |
195 |
Q |
| |
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|||||||| ||||||| |||| ||| || |||| | |||||| |||||| ||||||||||||| ||||| ||||| ||| |||||| |||||||| |
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| T |
18476130 |
aaggttgattaaaccaatttttccaagaggaatgttggaataaattaaataagaaatagagacatgtaattctattttatta--ttcaacatagtttcag |
18476033 |
T |
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| Q |
196 |
aacacatttacatcaatttttcatga |
221 |
Q |
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|| ||||||||||||| ||| ||||| |
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| T |
18476032 |
aagacatttacatcaaatttccatga |
18476007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 24886888 - 24886818
Alignment:
| Q |
149 |
aaatagagacatgaaattcaattttgttattttcaacgtagtttcaaaacacatttacatcaatttttcatga |
221 |
Q |
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||||||||||||||||||| ||||| ||| |||||| ||||| | |||||||||||||||| ||| ||||| |
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| T |
24886888 |
aaatagagacatgaaattcgattttatta--ttcaacaaagttttagaacacatttacatcaaatttccatga |
24886818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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