View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17123_low_34 (Length: 251)

Name: NF17123_low_34
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17123_low_34
NF17123_low_34
[»] chr1 (5 HSPs)
chr1 (11-234)||(20148149-20148375)
chr1 (189-248)||(20148299-20148358)
chr1 (185-239)||(36386480-36386534)
chr1 (164-203)||(36386487-36386526)
chr1 (123-195)||(36386389-36386461)
[»] chr8 (1 HSPs)
chr8 (47-251)||(26162080-26162283)
[»] chr4 (3 HSPs)
chr4 (11-234)||(34828215-34828433)
chr4 (11-77)||(19665453-19665519)
chr4 (123-175)||(2761731-2761783)
[»] chr7 (1 HSPs)
chr7 (21-139)||(1322378-1322495)
[»] chr5 (2 HSPs)
chr5 (112-202)||(28201691-28201780)
chr5 (126-159)||(27026905-27026938)
[»] chr3 (3 HSPs)
chr3 (112-196)||(27759310-27759393)
chr3 (124-236)||(34157952-34158064)
chr3 (123-167)||(9104643-9104687)
[»] scaffold0054 (1 HSPs)
scaffold0054 (112-186)||(31882-31955)
[»] chr6 (1 HSPs)
chr6 (123-167)||(13773054-13773098)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 20148149 - 20148375
Alignment:
Q  11 catagggtaaaatattataaaataaatggtacaagccataagctgctaacaagaaaagaaatactcacaaaccatgcatcttttattttttctttaggtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20148149 catagggtaaaatattataaaataaatggtacaagccataagctgctaacaagaaaagaaatactcacaaaccatgcatcttttattttttctttaggtt 20148248  T
Q  111 attatgcaatgcaatgcatgctcctaaaaactaaatgatccggatataagccaccactaaggcacacaaaatatttaaccgccactaaggcacgcata-- 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||      
T  20148249 attatgcaatgcaatgcatgctcctaaaaactaaatgatccggatataagccgccactaaggcacacataatatttaacctccactaaggcacacatata 20148348  T
Q  209 -atatttaacctccactaaggcacaca 234  Q
     || ||||||  |||||||||||||||    
T  20148349 tatttttaactgccactaaggcacaca 20148375  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 20148299 - 20148358
Alignment:
Q  189 ccgccactaaggcacgcataatatttaacctccactaaggcacacataaatatttttaac 248  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  20148299 ccgccactaaggcacacataatatttaacctccactaaggcacacatatatatttttaac 20148358  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 36386480 - 36386534
Alignment:
Q  185 ttaaccgccactaaggcacgcataatatttaacctccactaaggcacacataaat 239  Q
    ||||| ||||||||||||| |||||||||||||| ||||| ||||||||| ||||    
T  36386480 ttaactgccactaaggcacacataatatttaaccgccacttaggcacacagaaat 36386534  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 36386487 - 36386526
Alignment:
Q  164 ccactaaggcacacaaaatatttaaccgccactaaggcac 203  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  36386487 ccactaaggcacacataatatttaaccgccacttaggcac 36386526  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 36386389 - 36386461
Alignment:
Q  123 aatgcatgctcctaaaaactaaatgatccggatataagccaccactaaggcacacaaaatatttaaccgccac 195  Q
    ||||||||||| |||| |||| |||||| |||||| |  | |||||||||||| || |||||||||| |||||    
T  36386389 aatgcatgctcttaaatactacatgatctggatatgactcgccactaaggcacgcataatatttaactgccac 36386461  T

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Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 47 - 251
Target Start/End: Complemental strand, 26162283 - 26162080
Alignment:
Q  47 cataagctgctaacaagaaaagaaatactcacaaaccatgcatcttttattttttctttaggttattatgcaatgcaatgcatgctcctaaaaactaaat 146  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26162283 cataagctgctaacaagaaaagaaatattcacaaaccattcatcttttattttt-ctttaggttattatgcaatgcaatgcatgctcctaaaaactaaat 26162185  T
Q  147 gatccggatataagccaccactaaggcacacaaaatatttaaccgccactaaggcacgcataatatttaacctccactaaggcacacataaatattttta 246  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||||||  | |||| || ||| ||| |||||||||    
T  26162184 gatctggagataagccgccactaaggcacacaaaatatttaaccgctactaaggcacacaaaatatttaactgctactaggggacatatatatattttta 26162085  T
Q  247 accgc 251  Q
    |||||    
T  26162084 accgc 26162080  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 34828215 - 34828433
Alignment:
Q  11 catagggtaaaatattataaaataaatggtacaagccataagctgctaacaagaaaagaaatactcacaaaccatgcatcttttattttttctttaggtt 110  Q
    |||| |||| ||||||||||||||||| |||||||  ||||||||| |||||||||||||||| ||||||| ||| | ||||||| ||||||||||||||    
T  34828215 catacggtacaatattataaaataaattgtacaagatataagctgccaacaagaaaagaaatattcacaaatcattcttctttta-tttttctttaggtt 34828313  T
Q  111 attatgcaatgcaatgcatgctcctaaaaactaaatgatccggatataagccaccactaaggcacacaaaatatttaaccgccactaaggcacgcataa- 209  Q
    |||     ||| |||||||||||||||||||||||||||||| ||||||  | ||||||||||| ||| | ||||||||| ||||  | |||  |||||     
T  34828314 att-----atgtaatgcatgctcctaaaaactaaatgatccgaatataactcgccactaaggcaaacatactatttaaccaccacacaagcaaacataat 34828408  T
Q  210 tatttaacctccactaaggcacaca 234  Q
    ||||||||| ||||||| |||||||    
T  34828409 tatttaaccaccactaaagcacaca 34828433  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 19665453 - 19665519
Alignment:
Q  11 catagggtaaaatattataaaataaatggtacaagccataagctgctaacaagaaaagaaatactca 77  Q
    |||| |||| ||||||||||||||||| |||| || |||||||||| || |||||||||| ||||||    
T  19665453 catacggtacaatattataaaataaattgtacgagacataagctgccaaaaagaaaagaattactca 19665519  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 2761731 - 2761783
Alignment:
Q  123 aatgcatgctcctaaaaactaaatgatccggatataagccaccactaaggcac 175  Q
    ||||||||||| |||| |||||||||| ||||||||| || ||||||||||||    
T  2761731 aatgcatgctcttaaatactaaatgattcggatataacccgccactaaggcac 2761783  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 1322378 - 1322495
Alignment:
Q  21 aatattataaaataaatggtacaagccataagctgctaacaagaaaagaaatactcacaaaccatgcatcttttattttttctttaggttattatgcaat 120  Q
    ||||||||||||||||| | ||||| |||||||||| |||||||||||||||| ||||||| ||| | ||||||| ||||||||||||||| | ||||||    
T  1322378 aatattataaaataaattgaacaagacataagctgccaacaagaaaagaaatattcacaaatcattcttctttta-tttttctttaggttactttgcaat 1322476  T
Q  121 gcaatgcatgctcctaaaa 139  Q
    |||||||||||||||||||    
T  1322477 gcaatgcatgctcctaaaa 1322495  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 28201780 - 28201691
Alignment:
Q  112 ttatgcaatgcaatgcatgctcctaaaaactaaatgatccggatataagccaccactaaggcacacaaaatatttaaccgccactaaggca 202  Q
    ||||||||||  |||||||||||||||| |||||||||| |||||||| |||||| ||||||||| ||||||||||| ||||||| |||||    
T  28201780 ttatgcaatgttatgcatgctcctaaaa-ctaaatgatcaggatataacccaccattaaggcacaaaaaatatttaaacgccacttaggca 28201691  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 27026938 - 27026905
Alignment:
Q  126 gcatgctcctaaaaactaaatgatccggatataa 159  Q
    |||||||||||||||||| |||||||||||||||    
T  27026938 gcatgctcctaaaaactacatgatccggatataa 27026905  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 27759393 - 27759310
Alignment:
Q  112 ttatgcaatgcaatgcatgctcctaaaaactaaatgatccggatataagccaccactaaggcacacaaaatatttaaccgccact 196  Q
    ||||||||||| |||||||||| ||||| ||||||||| | ||||||| | ||||||||||||||||| ||||||||||| ||||    
T  27759393 ttatgcaatgctatgcatgctcataaaa-ctaaatgattcagatataacctaccactaaggcacacaagatatttaaccgtcact 27759310  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 34157952 - 34158064
Alignment:
Q  124 atgcatgctcctaaaaactaaatgatccggatataagccaccactaaggcacacaaaatatttaacc-gccactaaggcacgcataatatttaacctcca 222  Q
    |||||||||||| ||| | | |||| |||||||||| || ||||||||||| ||| | ||||||||| ||||||||||||| || ||| ||||||| |||    
T  34157952 atgcatgctcctgaaatc-acatgaaccggatataaaccgccactaaggcaaacatattatttaacccgccactaaggcacacacaatttttaaccgcca 34158050  T
Q  223 ctaaggcacacata 236  Q
    |||||||| |||||    
T  34158051 ctaaggcaaacata 34158064  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 9104687 - 9104643
Alignment:
Q  123 aatgcatgctcctaaaaactaaatgatccggatataagccaccac 167  Q
    ||||||||||| |||| |||| ||||||||||||||| |||||||    
T  9104687 aatgcatgctcttaaatactacatgatccggatataacccaccac 9104643  T

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Target: scaffold0054 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 31955 - 31882
Alignment:
Q  112 ttatgcaatgcaatgcatgctcctaaaaactaaatgatccggatataagccaccactaaggcacacaaaatattt 186  Q
    ||||||||||  |||||||||||||||| ||||||||||| ||||| | || |||||||||||||||||||||||    
T  31955 ttatgcaatgatatgcatgctcctaaaa-ctaaatgatccagatatgacccgccactaaggcacacaaaatattt 31882  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 13773054 - 13773098
Alignment:
Q  123 aatgcatgctcctaaaaactaaatgatccggatataagccaccac 167  Q
    ||||||||||| |||| |||| ||||||||||||||| |||||||    
T  13773054 aatgcatgctcttaaatactacatgatccggatataatccaccac 13773098  T

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