View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17123_low_36 (Length: 249)

Name: NF17123_low_36
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17123_low_36
NF17123_low_36
[»] chr1 (5 HSPs)
chr1 (1-84)||(33139366-33139449)
chr1 (1-77)||(33180606-33180682)
chr1 (3-70)||(33289423-33289490)
chr1 (148-212)||(33139524-33139586)
chr1 (1-69)||(33157791-33157859)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 33139366 - 33139449
Alignment:
Q  1 tattgggttatcatcaccattgttgcaattgttactcagtttgaatgtctcactactaattcgtaagtttaattattgtttttt 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33139366 tattgggttatcatcaccattgttgcaattgttactcagtttgaatgtctcaccactaattcgtaagtttaattattgtttttt 33139449  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33180606 - 33180682
Alignment:
Q  1 tattgggttatcatcaccattgttgcaattgttactcagtttgaatgtctcactactaattcgtaagtttaattatt 77  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||    
T  33180606 tattgggttatcaacaccattgttgcaattgttactcagattgaatgcctcactactgattcgtaagtttacttatt 33180682  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 33289490 - 33289423
Alignment:
Q  3 ttgggttatcatcaccattgttgcaattgttactcagtttgaatgtctcactactaattcgtaagttt 70  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  33289490 ttgggttatcatcaccattgttacaattgttactcagattgaatgtctcactactgattcgtaagttt 33289423  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 33139524 - 33139586
Alignment:
Q  148 atgttaaaaccttgctttgtttataatcaagttagcaacattatatgagtcaataacttcattaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  33139524 atgttaaaaccttgctttgtttataatcaagttagcaacattata--agtcaaaaacttcattaa 33139586  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33157791 - 33157859
Alignment:
Q  1 tattgggttatcatcaccattgttgcaattgttactcagtttgaatgtctcactactaattcgtaagtt 69  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || || ||| |||||||||||    
T  33157791 tattgggttatcatcaccattgttgcaattgttactcagattgaatgccttacaactgattcgtaagtt 33157859  T

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