View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_4 (Length: 601)
Name: NF17123_low_4
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 6138342 - 6137997
Alignment:
| Q |
18 |
acagcaggtccagctccagtttctctagccgggatgaacgatgcgcgtgccagtcctccattgatgaagtgggaattagtgctagggttattgttgttgc |
117 |
Q |
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| T |
6138342 |
acagcaggtccagctccagtttctctagccgggatgaacgatgcgcgtgccagtcctccattgatgaagtgggaattagtgctagggttattgttgttgt |
6138243 |
T |
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| Q |
118 |
tgctgctactaccccccaaagcattgtaactagtaggaaccatgccaagagacgaaccaaataatcttggaggagaagaggatgaagatgaagcatgatt |
217 |
Q |
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| T |
6138242 |
tgctgctactaccccccaaagcattgtaactagtaggaaccatgccaagagacgaaccaaataatcttggaggagaagaggatgaagatgaagcatgatt |
6138143 |
T |
|
| Q |
218 |
atctgaagaattgattagcctcatatatcttaattgccttgcttcgcaaaccgggctgctctcctctcttagccaatttcctaaacgaaattgatgtgcc |
317 |
Q |
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| T |
6138142 |
atctgaagaattgattagcctcatatatcttaattgccttgcttcgcgaaccgggctgctctcctctcttagccaatttcctaaacgaaattgatgtgcc |
6138043 |
T |
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| Q |
318 |
attctagcttcttacctgcatgtaggccacaataacaattatatat |
363 |
Q |
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| T |
6138042 |
attctagcttcttacctgcatttaggccacaataacaattatatat |
6137997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 357 - 579
Target Start/End: Complemental strand, 6137979 - 6137746
Alignment:
| Q |
357 |
tatatatcaacacaaacatagacatctgatattgtcatcgcgctaacggtgatatgtagacaccaataataatttgataaaatgaacgtaatcacatata |
456 |
Q |
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| T |
6137979 |
tatatatcaacacaaacatagacatatgatattgtcatagcgctaacggtgatatgtagacaccaataataatttgataaaatgaacgtaatcacatata |
6137880 |
T |
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| Q |
457 |
tagatgactgtcgtgttgaacactaacatgccactgaatatttttgatc-----------taaacatgatattcttttgtgtctatcctctttcatcatg |
545 |
Q |
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| T |
6137879 |
tagatgactgtcgtgttgaacactaacatgtcactgaatatttttgatcagaagtatataaaaacatgatatccttttgtgtctatcctctttcatcatg |
6137780 |
T |
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| Q |
546 |
ataatttttaaaatccagaataaaaatattgttt |
579 |
Q |
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| T |
6137779 |
ataattttaaaaatccagaataaaaatattgttt |
6137746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 30193483 - 30193426
Alignment:
| Q |
324 |
gcttcttacctgcatgtaggccacaataacaattatatatcaacacaaacatagacat |
381 |
Q |
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|||||||||||||||| | |||| || ||||| | |||||||||| |||||||||||| |
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| T |
30193483 |
gcttcttacctgcatgcacgccataacaacaactgtatatcaacataaacatagacat |
30193426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 438
Target Start/End: Complemental strand, 30193399 - 30193371
Alignment:
| Q |
410 |
atgtagacaccaataataatttgataaaa |
438 |
Q |
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| T |
30193399 |
atgtagacaccaataataatttgataaaa |
30193371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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