View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_43 (Length: 234)
Name: NF17123_low_43
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 44870695 - 44870897
Alignment:
| Q |
18 |
cattcaacttatgcttctcttgactaaactcattagaagtaaaatctccaccatcatcgtcactactcacattcttcaacaatgtccaatttatattatc |
117 |
Q |
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| T |
44870695 |
cattcaacttatgcttctcttgactaaactcattagaagtaaaatctccaccatcatcgtcactactcacattcttcaacaatgtccaatttatattatc |
44870794 |
T |
|
| Q |
118 |
tgcaaccttaattggtttccccaatagcttctttagacataagaacatgttcccacaaactacactgcaaaaccaattcttctttttaatattgctctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44870795 |
tgcaaccttaattggtttccccaatagcttctttagacataagaacatgttcccacaaactacactgcaaaaccaattcttctttttaatattgctctct |
44870894 |
T |
|
| Q |
218 |
gtg |
220 |
Q |
| |
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||| |
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| T |
44870895 |
gtg |
44870897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 47529105 - 47528905
Alignment:
| Q |
16 |
cacattcaacttatgcttctcttgactaaactcattagaagtaaaatctccaccatcatcgtcactactcacattcttcaacaatgtccaatttatatta |
115 |
Q |
| |
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|||||| |||||| |||||| |||||||||||||| ||||| |||||||| |||||||| |||||| ||||||||||||||| ||||||| ||| ||| |
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| T |
47529105 |
cacatttaacttacgcttcttttgactaaactcatcagaagaaaaatctctgccatcatcatcactattcacattcttcaacagtgtccaagttagattg |
47529006 |
T |
|
| Q |
116 |
tctgcaaccttaattggtttccccaatagcttctttagacataagaacatgttcccacaaactacactgcaaaaccaattcttctttttaatattgctct |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||| ||||| | ||||||| | |||||||||||||||||||||||| ||| |||| |
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| T |
47529005 |
tctgcaaccttaattggtttccacaatagcttctttagacatatgaacctgttcacgcaaactatattgcaaaaccaattcttctttttaacattactct |
47528906 |
T |
|
| Q |
216 |
c |
216 |
Q |
| |
|
| |
|
|
| T |
47528905 |
c |
47528905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 47523692 - 47523557
Alignment:
| Q |
81 |
tactcacattcttcaacaatgtccaatttatattatctgcaaccttaattggtttccccaatagcttctttagacataagaacatgttcccacaaactac |
180 |
Q |
| |
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|||||||||||||||| ||||||||| ||| |||| ||||||| | ||||||||||| | | |||||||||||||||||||||||| ||||||||||| |
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| T |
47523692 |
tactcacattcttcaataatgtccaagttagattagctgcaactgttattggtttccctgacaacttctttagacataagaacatgttaccacaaactac |
47523593 |
T |
|
| Q |
181 |
actgcaaaaccaattcttctttttaatattgctctc |
216 |
Q |
| |
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||||||||||||||||||||||| | ||||||||| |
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| T |
47523592 |
actgcaaaaccaattcttcttttcaccattgctctc |
47523557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 47550708 - 47550646
Alignment:
| Q |
146 |
ttctttagacataagaacatgttcccacaaactacactgcaaaaccaattcttctttttaata |
208 |
Q |
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|||| |||||||||||||||||||||||||||| || |||||||||||| || |||| |||| |
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| T |
47550708 |
ttctgtagacataagaacatgttcccacaaacttcatggcaaaaccaattatttttttcaata |
47550646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 9819890 - 9820009
Alignment:
| Q |
78 |
cactactcacattcttcaacaatgtccaatttatattatctgcaaccttaattggtttccccaatagcttctttagacataagaacatgttcccacaaac |
177 |
Q |
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|
|||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||| |
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| T |
9819890 |
cactactcacattcttcaccaatgtccatgttaaattatctgcaaccttaattggttttcctaacaacttctttagacataagaacatgttcccacaaac |
9819989 |
T |
|
| Q |
178 |
tacactgcaaaaccaattct |
197 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
9819990 |
cacactgcaaaaccaattct |
9820009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 9854090 - 9853971
Alignment:
| Q |
78 |
cactactcacattcttcaacaatgtccaatttatattatctgcaaccttaattggtttccccaatagcttctttagacataagaacatgttcccacaaac |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||| |
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| T |
9854090 |
cactactcacattcttcaccaatgtccatgttaaattatctgcaaccttaattggttttcctaacaacttctttagacataagaacatgttcccacaaac |
9853991 |
T |
|
| Q |
178 |
tacactgcaaaaccaattct |
197 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
9853990 |
cacactgcaaaaccaattct |
9853971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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