View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_46 (Length: 225)
Name: NF17123_low_46
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 5951779 - 5951984
Alignment:
| Q |
1 |
ataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaat |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5951779 |
ataagtaccaataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacccaggtcaccaattttcacttgtccaagatggccattgacaaat |
5951878 |
T |
|
| Q |
101 |
atgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5951879 |
atgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgctt |
5951978 |
T |
|
| Q |
201 |
gcatgt |
206 |
Q |
| |
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|||||| |
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| T |
5951979 |
gcatgt |
5951984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 31952004 - 31952203
Alignment:
| Q |
2 |
taagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaata |
101 |
Q |
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| T |
31952004 |
taagtacctataacactatgagctgattgagaaccttggagaattgcagctagtccaaggtcaccaattttcacttgtccaagatgaccattgacaaata |
31952103 |
T |
|
| Q |
102 |
tgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttg |
201 |
Q |
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| T |
31952104 |
tgttatcacattttaggtccctatggattacaggtggatcatggccatgtaaataaactagaccttgtaaaatttggcgcgcccaactctttattgcttg |
31952203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 28188447 - 28188292
Alignment:
| Q |
1 |
ataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaat |
100 |
Q |
| |
|
|||||||| |||||||||||| | || |||||| ||||||||||||||| |||||| | |||||||||||| |||||||||||| |||||||||| | |
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| T |
28188447 |
ataagtacttataacactgtgcgttggttgcgaaacacgaagaatcgctgttagacccaagtcaccaatttttgtttgtccaagatgtccattgacaagt |
28188348 |
T |
|
| Q |
101 |
atgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata |
156 |
Q |
| |
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|||||||| ||||||||||| ||||||||||| ||| ||||||| ||||||||||| |
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| T |
28188347 |
atgttatcacacttgaggtccctatgaattactggatgatcatgttcatgtagata |
28188292 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 197
Target Start/End: Original strand, 18077784 - 18077978
Alignment:
| Q |
3 |
aagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatat |
102 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| | |||||| ||||||||| || || | || |||||||||||| |||| | ||||||||||||| |
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| T |
18077784 |
aagtacctataacactgtgtgctggctatgaaccatggagaatccctgctagacttaagtaaacagttttcacttgtcaaagacgtccattgacaaatac |
18077883 |
T |
|
| Q |
103 |
gttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattg |
197 |
Q |
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|||| | ||||||| |||||||||||| | |||||||| |||||||||||||||||||| | ||| ||||| || ||||||||||||||| |
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| T |
18077884 |
tatatcacgtttgaggttcctatgaattacccgtggatcatgttcatgtagataaacaagaccctctaacatttgacgtgcccaactctttattg |
18077978 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 28153806 - 28153709
Alignment:
| Q |
61 |
gtcaccaattttcacttgtccaagatggccattgacaaatatgt--tatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata |
156 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| ||||| |||| ||||||||||| |||||| |||| ||| ||||||| ||||||||||| |
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| T |
28153806 |
gtcaccaatttttgcttgtccaagatgtccattgacaagtatgttatatcacacttgaggtccctatgagttactggatgatcatgttcatgtagata |
28153709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 9908003 - 9907865
Alignment:
| Q |
6 |
tacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgtt |
105 |
Q |
| |
|
||||||| ||||||||||| | || || ||||||||||| ||||| || |||| |||||||| || || | || | ||| ||||||||||| ||||| |
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| T |
9908003 |
tacctatgacactgtgtgcatgttgggagccacgaagaattgctgcaagccctaaatcaccaatcttgaccttacccatatgaccattgacaaagatgtt |
9907904 |
T |
|
| Q |
106 |
atcgcacttgaggtctctatgaattaccggaggatcatg |
144 |
Q |
| |
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||| ||||| ||||||||||| || || ||||||||||| |
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| T |
9907903 |
atcacactttaggtctctatgtatcacaggaggatcatg |
9907865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 27092762 - 27092817
Alignment:
| Q |
85 |
atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat |
140 |
Q |
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|
|||||||||||||||||| ||||| || |||||||||||||| || || ||||||| |
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| T |
27092762 |
atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat |
27092817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 27185539 - 27185484
Alignment:
| Q |
85 |
atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat |
140 |
Q |
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|||||||||||||||||| ||||| || |||||||||||||| || || ||||||| |
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| T |
27185539 |
atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat |
27185484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 22396983 - 22397024
Alignment:
| Q |
67 |
aattttcacttgtccaagatggccattgacaaatatgttatc |
108 |
Q |
| |
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||||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
22396983 |
aattttcacgtgtccaagatgtccattgacaaatgtgttatc |
22397024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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