View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_47 (Length: 219)
Name: NF17123_low_47
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 10233978 - 10233777
Alignment:
| Q |
14 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagtt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10233978 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagtt |
10233879 |
T |
|
| Q |
114 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtattatgattcttagtgata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
10233878 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattctttgtgata |
10233779 |
T |
|
| Q |
214 |
tt |
215 |
Q |
| |
|
|| |
|
|
| T |
10233778 |
tt |
10233777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 8336862 - 8336661
Alignment:
| Q |
14 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8336862 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagtt |
8336763 |
T |
|
| Q |
114 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtattatgattcttagtgata |
213 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8336762 |
acactttagttatcatattgcaatacttattaccttataattttttccttacagttttcaaccaacttaaattcctttcgtgttatgattcttagtgata |
8336663 |
T |
|
| Q |
214 |
tt |
215 |
Q |
| |
|
|| |
|
|
| T |
8336662 |
tt |
8336661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 22080888 - 22080835
Alignment:
| Q |
16 |
agatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaa |
69 |
Q |
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||||||||||||| | || ||||||||||| ||||||||| | ||||||||||| |
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| T |
22080888 |
agatgtcattggaatggtccaggacatgggctactgtcaattgaatgaagggaa |
22080835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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