View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17123_low_49 (Length: 202)

Name: NF17123_low_49
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17123_low_49
NF17123_low_49
[»] chr3 (27 HSPs)
chr3 (19-186)||(18165773-18165940)
chr3 (19-186)||(19464970-19465137)
chr3 (19-191)||(19414796-19414968)
chr3 (19-191)||(19437570-19437742)
chr3 (19-191)||(18147442-18147614)
chr3 (20-191)||(18873095-18873266)
chr3 (19-186)||(25463667-25463834)
chr3 (19-190)||(18109052-18109223)
chr3 (19-191)||(19376234-19376406)
chr3 (19-190)||(17950445-17950616)
chr3 (19-123)||(17942634-17942738)
chr3 (19-191)||(19334621-19334793)
chr3 (19-116)||(19400413-19400510)
chr3 (27-118)||(16677895-16677986)
chr3 (17-187)||(18103962-18104132)
chr3 (19-116)||(14895606-14895703)
chr3 (19-123)||(19381573-19381677)
chr3 (19-191)||(19393761-19393933)
chr3 (25-122)||(19354396-19354493)
chr3 (19-123)||(18116645-18116749)
chr3 (21-181)||(19425309-19425469)
chr3 (19-122)||(18016703-18016806)
chr3 (19-122)||(19352073-19352176)
chr3 (19-88)||(19439359-19439428)
chr3 (19-190)||(17726753-17726924)
chr3 (19-190)||(19027982-19028153)
chr3 (19-123)||(19461867-19461973)
[»] chr4 (2 HSPs)
chr4 (19-191)||(15536145-15536317)
chr4 (19-191)||(2709804-2709976)
[»] scaffold0648 (1 HSPs)
scaffold0648 (19-186)||(3320-3487)
[»] scaffold0640 (1 HSPs)
scaffold0640 (19-186)||(6020-6187)
[»] scaffold0274 (2 HSPs)
scaffold0274 (19-186)||(2789-2956)
scaffold0274 (27-123)||(21304-21400)
[»] chr8 (1 HSPs)
chr8 (27-184)||(8460164-8460321)
[»] chr6 (1 HSPs)
chr6 (43-150)||(13666190-13666297)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 18165940 - 18165773
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  18165940 gaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtgaaatcaaaattggtatggttccagaaaattcattttctcccaagtt 18165841  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 186  Q
    |||||||  ||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||    
T  18165840 catgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagcctattactccaca 18165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 19465137 - 19464970
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||| ||||||||    
T  19465137 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcattttcgcccaagtt 19465038  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 186  Q
    |||| ||  ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  19465037 catgttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagcctattactccaca 19464970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19414968 - 19414796
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  19414968 gaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaatt 19414869  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    ||||| ||| ||||| ||| ||  |||| ||| ||| | ||||||||| ||||||||||||||||||||||||    
T  19414868 catgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagcctattactccacaggttc 19414796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19437742 - 19437570
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19437742 gaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagtt 19437643  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    |||| ||  |||||| |||   |||||||||| ||||| || ||| ||||| | |||||||||||||||||||    
T  19437642 catggtttccaattgtttccggttagagaagtacaatggaagttcccctgacaacctattactccacaggttc 19437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 18147614 - 18147442
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18147614 gaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagtt 18147515  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    |||||||  |||||| ||| | | |||||||| ||||| || ||| || || | |||||||||||||||||||    
T  18147514 catgatttccaattgtttccagtaagagaagtacaatggaagttccccagacaacctattactccacaggttc 18147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 18873095 - 18873266
Alignment:
Q  20 aatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttc 119  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||    
T  18873095 aatattcccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatgtttccagaaaattcattttctcccaaattc 18873194  T
Q  120 atgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    | |||   ||| || ||| | | ||||| |||   |  ||||||||| ||||||||||||||||||||||||    
T  18873195 aagatctgcaactgtttccattcagagaggtgatcttgaacttcaccagatagcctattactccacaggttc 18873266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 25463834 - 25463667
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||| | ||| |||  | ||||||||||||||||||||||||||||||||||||||    
T  25463834 gaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatggttccagaaaattcattttctcccaagtt 25463735  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 186  Q
    |||||||  ||||||  || ||| ||||| ||| | |  ||||||||| |||||||||||| ||||||    
T  25463734 catgatttccaattgtctccaatcagagaggtgtactagaacttcaccagatagcctattattccaca 25463667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 18109223 - 18109052
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |   |||||||||| ||| |||||||||||||||||||||||||    
T  18109223 gaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagtt 18109124  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 190  Q
    |||||||  ||||||  || ||| ||||| |||   |  ||||||||| ||||||||||||||||| |||||    
T  18109123 catgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 18109052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19376406 - 19376234
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||||||||||||||  |||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  19376406 gaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatggttccagaaaattcattttctcccaaatt 19376307  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    || || |  |||||| ||  ||  ||||| |||   |  ||||||||| ||||||||||||||||| ||||||    
T  19376306 caagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagcctattactccataggttc 19376234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 17950616 - 17950445
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| |   |||||||||| ||| |||||||||||||||||||||||||    
T  17950616 gaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagtt 17950517  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 190  Q
    |||||||  ||||||  || ||| ||||| |||   |  ||||||||| ||||||||||||||||| |||||    
T  17950516 catgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 17950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 17942738 - 17942634
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |   ||||||||||||||||| |||| |||||||||||||| ||    
T  17942738 gaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatggttccaaaaaactcattttctcccaaatt 17942639  T
Q  119 catga 123  Q
    |||||    
T  17942638 catga 17942634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19334793 - 19334621
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||||||||||||||| || ||||||||||||| || || ||||||||||||||||    |||||||| ||||||||||||||||||||||||| ||    
T  19334793 gaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcattttctcccaaatt 19334694  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
     |||| ||||||||| ||| ||| |||||  |||  |  ||||||||| || |||||||||||||| ||||||    
T  19334693 tatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggttc 19334621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 19400510 - 19400413
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 116  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |   |||||||||||||||| |||||||||||||||||||||    
T  19400510 gaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaag 19400413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 16677986 - 16677895
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  16677986 ccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatggttccagaaaattcattttctcctaagtt 16677895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 18104132 - 18103962
Alignment:
Q  17 cagaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 116  Q
    |||||| |||||||||||||| || ||||||||||||| |||||||||||||||||||||    | |||||| ||||||||||||||||||||||| | |    
T  18104132 cagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcctacg 18104033  T
Q  117 ttcatgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacag 187  Q
    |||||| |   |||||| ||||| |||||||||| ||||| || ||  || || | |||||||||||||||    
T  18104032 ttcatggtctgcaattgtttcaagttagagaagtacaatggaagtttccccgacaacctattactccacag 18103962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 14895606 - 14895703
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 116  Q
    ||||| |||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  14895606 gaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtatagttccataaaattcattttctcccaag 14895703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 19381677 - 19381573
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||| |   | ||||||||||||||||||||||||||||||||||| ||    
T  19381677 gaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctgataagttcattggtatggttccagaaaattcattttctcccaaatt 19381578  T
Q  119 catga 123  Q
    |||||    
T  19381577 catga 19381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19393933 - 19393761
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||| ||||||||||| || |||||||||||||||||| |||||||||||| ||||   | ||||||| |||||||||||||||||| |||||| ||    
T  19393933 gaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgtttccagaaaattcattttttcccaaatt 19393834  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    ||||||   ||||||  || ||| ||||| ||  |||| ||||||||| || ||| |||||||||| ||||||    
T  19393833 catgatctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactccataggttc 19393761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 19354493 - 19354396
Alignment:
Q  25 tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg 122  Q
    |||||||||||||||| ||||||||||||||||||  ||||  |||||||||  ||||||||||||||||||||||||| ||  ||||||||||||||    
T  19354493 tcccttcaaattggttggctctcaatatgaccactgttaaggattgtgacattttgattggtatggttccagaaaattcgttagctcccaagttcatg 19354396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 18116749 - 18116645
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||| ||||||||||||||||| |||||| |||||| |||||||| | |||||  ||  | | ||||||||||||||||||||||||||||||||||||    
T  18116749 gaatactcccttcaaattggttacctctcagtatgactacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagtt 18116650  T
Q  119 catga 123  Q
    |||||    
T  18116649 catga 18116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 19425469 - 19425309
Alignment:
Q  21 atagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttca 120  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |   | ||||||||| |||| ||||||| ||||||||||||  |||    
T  19425469 atagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatca 19425370  T
Q  121 tgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattact 181  Q
    ||||   |||||| ||| ||| ||||| ||||  |  ||||||||  |||||| |||||||    
T  19425369 tgatctgcaattgtttccaatcagagaggtgctgtataacttcacaggatagcttattact 19425309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 18016806 - 18016703
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||| ||||||||||||  || ||||||||||||||||||  ||||||||||||||||   | ||||||| |||||||||||||||||| |||||||||    
T  18016806 gaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtgacatccctactggtatgtttccagaaaattcattttttcccaagtt 18016707  T
Q  119 catg 122  Q
    ||||    
T  18016706 catg 18016703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 19352176 - 19352073
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||| ||||||||||||  || ||||| |||||||||||| |||||||||||||||||   |  |||||| ||||||||||||||||||||||||||||    
T  19352176 gaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtgacatccctaccggtatgtttccagaaaattcattttctcccaagtt 19352077  T
Q  119 catg 122  Q
    ||||    
T  19352076 catg 19352073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 19439428 - 19439359
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtat 88  Q
    ||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  19439428 gaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat 19439359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 17726753 - 17726924
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| ||||||||| || ||| ||| ||||||||||| |||||||| ||||||||||   | ||||||| |||||||||||||||||||||||||  |    
T  17726753 gaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaat 17726852  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 190  Q
     |||  |  |||||| ||||||| ||||| |||   |  ||||||||| || |||||||||||||| |||||    
T  17726853 aatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt 17726924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 19027982 - 19028153
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| ||||||||| || ||| ||| ||||||||||| |||||||| ||||||||||   | ||||||| |||||||||||||||||||||||||  |    
T  19027982 gaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaat 19028081  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 190  Q
     |||  |  |||||| ||||||| ||||| |||   |  ||||||||| || |||||||||||||| |||||    
T  19028082 aatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt 19028153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 19461973 - 19461867
Alignment:
Q  19 gaatagtcccttcaaattggttagctctca--atatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 116  Q
    ||||| ||||||||||||||||| ||||||  ||||||  |||||||| | |||||  ||  | | ||||||||||||||||||||||||||||||||||    
T  19461973 gaatactcccttcaaattggttacctctcagtatatgaatacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaag 19461874  T
Q  117 ttcatga 123  Q
    |||||||    
T  19461873 ttcatga 19461867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 15536317 - 15536145
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||| ||||||||||||  || | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15536317 gaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 15536218  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    |||| ||  |||||| ||| ||  ||||| ||||| || ||||||||| || |  |||||| |||||||||||    
T  15536217 catggtttgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaactattattccacaggttc 15536145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 2709804 - 2709976
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||||||||| |||||||||||||||||||||||  ||||  || | ||| |||||| |||||||||| ||||||||||||||||||||||| | |||    
T  2709804 gaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttccagaaaattcattttctcctaggtt 2709903  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    ||||  |  ||||   | | ||||||||| ||||| || ||||||||| |||||  |||||||||||| ||||    
T  2709904 catggcttgcaatccataccaattagagaggtgcattggaacttcaccagatagtttattactccacaagttc 2709976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 3320 - 3487
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  3320 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 3419  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 186  Q
    ||||| |  |||||| ||| ||| ||||| |||   |  ||||||||| || ||| ||||||||||||    
T  3420 catgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 3487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 6187 - 6020
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  6187 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 6088  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 186  Q
    ||||| |  |||||| ||| ||| ||||| |||   |  ||||||||| || ||| ||||||||||||    
T  6087 catgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 2789 - 2956
Alignment:
Q  19 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  2789 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 2888  T
Q  119 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 186  Q
    ||||| |  |||||| ||| ||| ||||| |||   |  ||||||||| || ||| ||||||||||||    
T  2889 catgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 2956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 21400 - 21304
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga 123  Q
    ||||| |||||||||||||| ||||||||||||||||| | ||||| |||  |||||||||||||||||||||| |||||||||||||| |||||||    
T  21400 ccttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttctcccaaattcatga 21304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 8460321 - 8460164
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattc 126  Q
    |||||||||||||| ||||||||||||||||||||||| |   |||||||  | ||||| |||||||||||||||| ||||||||||||||| || |||     
T  8460321 ccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaagttaatcattt 8460222  T
Q  127 tcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactcca 184  Q
     |||||| ||||||| | ||| || ||  | |||||| || |||||||||||||||||    
T  8460221 ccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactcca 8460164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 13666190 - 13666297
Alignment:
Q  43 ctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattctcaattggttcaaatt 142  Q
    ||||||||||||||||||  |||||| |||| |||| ||||| ||||||||||  ||||||||||||||| ||||||||| ||  ||| || ||||| ||    
T  13666190 ctctcaatatgaccacttgaaagtttggtgaaatcaagattgttatggttccattaaattcattttctcctaagttcatggtttgcaactgtttcaagtt 13666289  T
Q  143 agagaagt 150  Q
    ||||||||    
T  13666290 agagaagt 13666297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University