View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17123_low_5 (Length: 589)
Name: NF17123_low_5
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 5 - 448
Target Start/End: Original strand, 49540664 - 49541108
Alignment:
| Q |
5 |
gatatgaaaatttcagcaaattattttt-gtctcaagaaaaccctagaaatgaaaatcatgttcccgagacaataccggcgagttctaactatacagaaa |
103 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49540664 |
gatatgaaaatttcagcaaattaattttagtctcaagaaaaccctagaaatgaaaataatgtacccgagacaatcccggcgagttctaactatacagaaa |
49540763 |
T |
|
| Q |
104 |
caaattgatacccagaaaggggaacacaaaaaacatgtctaaaacaaagttgagtcattgcagttaatttagctaattttcttttgatgttctttcattt |
203 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49540764 |
caaattgataccaagaaaggggaacacaaaaaacatgtctaaaacaaagttgagtcattgcagttaatttagctaattttcttttgatgttctttcattt |
49540863 |
T |
|
| Q |
204 |
gaacaatattttatacattgttagggttattgatcgtaataaacacaatgataggtaagaaataacaaacaaaatttacagaatctagaaacaatttgac |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49540864 |
gaacaatattttatacattgttagggttattcatcgtaataaacataatgataggtaagaaataacaaacaaaatttacagaatctagaaacaatttgac |
49540963 |
T |
|
| Q |
304 |
agagacaagaaagaaacc-agcgttttcttggcgaaatcaaagactgataacctgcataatacattgatggaaaaaatatagtaaaatagccaaaattga |
402 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
49540964 |
agagacaagaaagaaacctagcgttttcttggcgaaatcaaagactgataacctgcataatacattaat-gaaaaaatatagtaaaatagccaaaattga |
49541062 |
T |
|
| Q |
403 |
aaacagaagaaagtagcaaatttaacacccccttaccaattctcag |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49541063 |
aaacagaagaaagtagcaaatttaacacccccttaccaattctcag |
49541108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 484 - 574
Target Start/End: Original strand, 49541140 - 49541230
Alignment:
| Q |
484 |
tgtaattgtagaaagtgatttaaggaaggaagtggaattggaagttgggagcgaagtgtaaagtttgtttcgaattctgttatcttctctt |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49541140 |
tgtaattgtagaaagtgatttaaggaaggaagtggaattggaagttgggagcgaagtgtaaagtttgtttcggattctgttatcttctctt |
49541230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University