View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_6 (Length: 584)
Name: NF17123_low_6
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 33739280 - 33739588
Alignment:
| Q |
10 |
aagaaaattacaaatcatttagagcatgagaaaacagcactaacataacttttaagtttgaattgaaagactaaagtccaggtaaatagaatcaatgaaa |
109 |
Q |
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| T |
33739280 |
aagaaaaatccaaatcatttagagcatgagaaaacagcaataacataacttttaagtttaaattgaaagactaaagtccaggtaaatagaatcaatgaaa |
33739379 |
T |
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| Q |
110 |
cagattagtcataaaacaccattaattaattaatccagtaaacatacacatgacaagaggattttcaagagaaacataaacaaaacaaaaccaagagtca |
209 |
Q |
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| T |
33739380 |
cagattagtcataaaacaccattaattaattaatccagtaaacatacacatgacaagaggattttcaagagaaacataaacaaaacaaaaccaagagtca |
33739479 |
T |
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| Q |
210 |
caggtgtaccactactgctgctacgactatctatggtgataataattatacccaaattccattacacaccaaaacctaaacttgaactaacataacagta |
309 |
Q |
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| T |
33739480 |
taggtgtaccactactactactactactatctatggtgataataattatacccaaattccattacacaccaaaacctaaacttgaactaacataacagta |
33739579 |
T |
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| Q |
310 |
ccctccatg |
318 |
Q |
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| T |
33739580 |
ccctccatg |
33739588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 368 - 567
Target Start/End: Original strand, 33739647 - 33739846
Alignment:
| Q |
368 |
gagttcatttgagaccatttactggtgttgaaatagcaagtccaggccaagagaaacaatcaccagcaccaacaaaaccaccttcaccaccttctaactg |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33739647 |
gagttcatttgagaccatttactggtgttgaaatagcaagtccaggccaagagaaacaatcaccagcaccaacaaaaccaccttcaccaccttctaactg |
33739746 |
T |
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| Q |
468 |
ccacgtgtttccaacaacaccagaagacacgacaggaacaccatccatcattcctggaaaagcccaacctgttcttccaatcccaaatcccatttcttca |
567 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33739747 |
ccacgtgtttccaacaacaccagaagacacaacaggaacaccatccatcattcctggaaaagcccaacctgttcttccaatcccaaatcccatttcttca |
33739846 |
T |
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