View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_7 (Length: 516)
Name: NF17123_low_7
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 13421375 - 13421851
Alignment:
| Q |
16 |
aatatattaaaaatcgtggttgatctaaacatgcatgtaatatgagtaaattaaaattaatttataagatacatactaattgagtaacacaatatacttg |
115 |
Q |
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| T |
13421375 |
aatatattaaaaatcgtggttgatctaaacatg-----------agtaaattaaaattaatttataagatacatactaattgagtaacacaatatacttg |
13421463 |
T |
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| Q |
116 |
gagtagagagactttgtaagcaacaccatccattaattgagtaataatatgtctgaaatatacctaaaagnnnnnnnnn--gccaaacctaaactattga |
213 |
Q |
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| T |
13421464 |
gagtagagagactttgtaagcaacaccatgcattaattgagtaataatatgtctgaaatatacctaaaagtttttttttttgccaaacctaaactattga |
13421563 |
T |
|
| Q |
214 |
caatattaaattcattacacctaacttcattacaaatcatacacgtggtgtatgaaaaacttcacttttatagtggaggagtcacttgatttgtttttat |
313 |
Q |
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| T |
13421564 |
caatattaaattcattacacctaacttcattacaaatcatacacgtggtgtatgaaaaacttcacttttatagtggaggagtcacttgatttgtttttat |
13421663 |
T |
|
| Q |
314 |
gagtttagggatgaggcttaagagggtcacttgttttgattacctgccattttgggtaaggcaattggacccaaaattgtatatatagtacatttatatg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13421664 |
gagtttagggatgaggcttaagagggtcacttgttttgattacctgccattttgggtaaggcaattggacccaaaattgtgtatatagtacatttatatg |
13421763 |
T |
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| Q |
414 |
tgtcacattccttttctttcttttaatcattgaatatcgatcacatgatcttcattaacatgccaaagttgataactttaacatatag |
501 |
Q |
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| T |
13421764 |
tgtcacattccttttctttcttttaatcattgaatatcgatcacatgatcttcattaacatgccaaagttgataactttaacatatag |
13421851 |
T |
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