View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_8 (Length: 464)
Name: NF17123_low_8
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Original strand, 6019495 - 6019926
Alignment:
| Q |
11 |
gcactgtacacgtatctggtatggacggatacccaatacagatacttcactattttacgagtatccatgctttagaggttttgcagatatggcttataag |
110 |
Q |
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| T |
6019495 |
gcactgtacacgtatctggtatggacggatacccaatacagatacttcactattttacgagtatccatgctttagaggttttgcagatatggcttataag |
6019594 |
T |
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| Q |
111 |
gcgaacttctacaacatgttctcagtcaaatccgaagaaggacctcgctctcgtgagtttctacaatgttttcaaccaaatcatgtgaggggaattcatc |
210 |
Q |
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| T |
6019595 |
gcgaacttctacaacatgttctcagtcaaatccaaagaaggacctcgctctcgtgagtttctacaatgttttcaaccaaatcatgtgaggggaattcatc |
6019694 |
T |
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| Q |
211 |
accgacgtgacgacttgtttctcgtgagtctgcaatcaataacataacaagtcaatgannnnnnnnnnnnnnnattccattgtattatactaaaaattaa |
310 |
Q |
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| T |
6019695 |
accgacgtgacgacttgtttctcgtgagtgtgcaatcaataacataacaagtcaatgatgtgtgtgtgtgtgtattccattgtattatactaaaaattga |
6019794 |
T |
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| Q |
311 |
caaactcttgttatgcaccgcaaaataacctgacaatgtaccnnnnnnngagcgctgctatacaacacgacaagatcaacacacgacatgttgaacaaca |
410 |
Q |
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| T |
6019795 |
caaactcttgttatgcaccgcaaaataacctgacaatgtaccaaaaaaagagcgctgctatacaacacgacaagatcaacacacgacatgttgaacaaca |
6019894 |
T |
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| Q |
411 |
cccaattcactttataaatggatttcttttgg |
442 |
Q |
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| T |
6019895 |
cccaattcactttataaatggatttcttttgg |
6019926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 48583949 - 48583899
Alignment:
| Q |
390 |
cacacgacatgttgaacaacacccaattcactttataaatggatttctttt |
440 |
Q |
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| T |
48583949 |
cacacaacatgttgaacaacacttaattcactttataaatggatttctttt |
48583899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 14526083 - 14526033
Alignment:
| Q |
390 |
cacacgacatgttgaacaacacccaattcactttataaatggatttctttt |
440 |
Q |
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| T |
14526083 |
cacacgacatgttcaacagcacgcaattcactttattaatggatttctttt |
14526033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 41312898 - 41312934
Alignment:
| Q |
360 |
gagcgctgctatacaacacgacaagatcaacacacga |
396 |
Q |
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| T |
41312898 |
gagcgctgctatacaacacgacaaactcaacacacga |
41312934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 41312948 - 41312988
Alignment:
| Q |
399 |
tgttgaacaacacccaattcactttataaatggatttcttt |
439 |
Q |
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| T |
41312948 |
tgttgaacgacacccaattcactttattaatagatttcttt |
41312988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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