View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17124_high_1 (Length: 500)
Name: NF17124_high_1
Description: NF17124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17124_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 5 - 488
Target Start/End: Complemental strand, 5174365 - 5173881
Alignment:
| Q |
5 |
aaacataaattatcctaggatctatatcatcgttcttaaaggtggtaacgtgagagccaaggattattgtagacctattcatatgtcattatttgccttc |
104 |
Q |
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| T |
5174365 |
aaacataaattatcctaggatctatatcatcgttcttaaaggtggtaacgtgagagccaaggattattgtagacctattcatatgtcattatttgccttc |
5174266 |
T |
|
| Q |
105 |
atttattttataattaaagttctaaattggggactataaccatattataatgtaacaaacaatcaaaacaggacaacttttgcataagattatcagtt-g |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5174265 |
atttattttataattaaagttctaaattggggactaaaaccatattataatgtaacaaacaatcaaaacaggacaacttttgcataagattatcagtttg |
5174166 |
T |
|
| Q |
204 |
tcaccttttcataactgctatgcgatgataatataacataattagttgtccaaaacactacacaacatatattaatttcataacaatacagcttgtctcc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5174165 |
tcaccttttcataactgctatgcgatgataatataacataattagttgtccaaaacactacataacatatattaatttcataacaatacagcttgtctcc |
5174066 |
T |
|
| Q |
304 |
tttgtaaaacctttaactttgtgtcgatatcaacaatacggcctgcaattgtgacattctaatatatatactcacaaaaataaattatgtgcatacactc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5174065 |
tttgtaaaacctttaactttgtgtcgatatcaacaatacggcctgcaattgtgacattctaatatatatactcacaaaattaaattatgtgcatacactc |
5173966 |
T |
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| Q |
404 |
caaaaacacttgaatgaaatgactcgggtctcttacaacataacataggtcctaggtttcaatccagctctgagaatgcaacagc |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5173965 |
caaaaacacttgaatgaaatgactcgggtctcttacaacataacataggtcctaggtttcaatccagctctgagaatgcagcagc |
5173881 |
T |
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