View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17124_high_2 (Length: 465)
Name: NF17124_high_2
Description: NF17124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17124_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 25963560 - 25963428
Alignment:
| Q |
47 |
aattcgaggtggccgccgggaagagcgaaggttgcgtctccgacggaagcgcaacggcgaccgagaagaaacgatctgcctttcaagagaaatacgacta |
146 |
Q |
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| T |
25963560 |
aattcaaggtggccgccgggaagagcgaaggttgcgtctccgacggaagcacgacggcggccgagaaggaacgatctacctttcaagagaaatacgacaa |
25963461 |
T |
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| Q |
147 |
cagcaactctaggttctggtggcggcgacacca |
179 |
Q |
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| T |
25963460 |
cagcaactctaggttccggtggcggcgacacca |
25963428 |
T |
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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 238 - 385
Target Start/End: Complemental strand, 27205310 - 27205166
Alignment:
| Q |
238 |
ctattaagatttgttaattaccttataccaaacaaaaagttcttttaattaattagcttcaccctttcattcaccttatttaattaaccatagtaaattt |
337 |
Q |
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| T |
27205310 |
ctattaaaatttgttaattaacttataccaaa-aaaaatttcttt-aattaattggcttcaccctttcattcaccttatttaatcaaccatagtaaattt |
27205213 |
T |
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| Q |
338 |
atactataataccctttgaagaacagagaagaatataccgttgctcat |
385 |
Q |
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| T |
27205212 |
acactataata-actttgaagaacatggaagaatatatggttgctcat |
27205166 |
T |
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