View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17124_high_3 (Length: 405)
Name: NF17124_high_3
Description: NF17124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17124_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 3214958 - 3215311
Alignment:
| Q |
23 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3214958 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
3215057 |
T |
|
| Q |
123 |
aacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
222 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215058 |
aacaacagagataactggactataaccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
3215157 |
T |
|
| Q |
223 |
tctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgagtgttgtcttgcctttgcaagc |
322 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
3215158 |
tctataagattgcgagtatgaatgagatactcttgcaccgtacgattatcaaacgaggtagcacgcaattcaacacga-agttgtcttgcctttgcaagc |
3215256 |
T |
|
| Q |
323 |
atctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
377 |
Q |
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| T |
3215257 |
atttgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
3215311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 32460471 - 32460826
Alignment:
| Q |
22 |
acatcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactct |
121 |
Q |
| |
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| T |
32460471 |
acatcatcaatagtcttcttcttgaacttgtcaagacgagtctcatgagcaattaacagagactctacctcatcaatatcaatagtgtcaaatttgcttt |
32460570 |
T |
|
| Q |
122 |
caacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattg-aagcaagat |
220 |
Q |
| |
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||||||| || || ||||||||||| | |||||||||||||| ||||| |||||||| |||||| | | |||| ||||||| |||| | ||||||||| |
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| T |
32460571 |
caacaactgaaatcactggactatactcttgtggtaaaccttctaaaattacatctaaatgctgagtaatgggaactggatcaccaatggaaagcaagat |
32460670 |
T |
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| Q |
221 |
tgtctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgagtgttgtcttgcctttgcaa |
320 |
Q |
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| T |
32460671 |
tatcaattaaattgcgaatgcgaagaagatgctcctgtaccgtacgattatcaagagaagtagaacgcagttcaacacg-taactgccttgcctttgcac |
32460769 |
T |
|
| Q |
321 |
gcatctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
377 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
32460770 |
gcatctgcttgtgaaaataggtcacaagtttgttccgaagttcatacgcatgcgaag |
32460826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 36399448 - 36399611
Alignment:
| Q |
40 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
139 |
Q |
| |
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|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || | ||||||||||||||| || || || || ||||| ||||| | |
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| T |
36399448 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacagatataacag |
36399547 |
T |
|
| Q |
140 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatc |
203 |
Q |
| |
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||||| | | || ||||||||||| ||||| ||||| || || ||||| ||||||| |||||| |
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| T |
36399548 |
gactaaaatcttgcggtaaaccttctaaaatcacatccaaatgttgattaacaggaactggatc |
36399611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 52665850 - 52665923
Alignment:
| Q |
40 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaa |
113 |
Q |
| |
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|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || ||||||||||||||||| |
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| T |
52665850 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaatgtcaataacatcaaa |
52665923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 24789296 - 24789452
Alignment:
| Q |
40 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
139 |
Q |
| |
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|||||||| || |||||||| |||||||||| || || ||||| ||||| || || | ||||||||||||||| || || || || ||| | |||| | |
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| T |
24789296 |
ttcttgaatttatcaagacgtgtttcatgagtaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacaaatataatag |
24789395 |
T |
|
| Q |
140 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaa |
196 |
Q |
| |
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||||| | | |||||||||||||| ||||| ||||| || || ||||| ||||||| |
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| T |
24789396 |
gactaaaatcttgtggtaaaccttctaaaatcacatccaaatgttgattaacaggaa |
24789452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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