View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_high_16 (Length: 369)
Name: NF17125_high_16
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 30393638 - 30393982
Alignment:
| Q |
20 |
atcaggaccaatattttgatacatgcatatacatttttggatgtaaaatgctattcatgtacattccccgtgctcatgcacttttatgcatttcattttc |
119 |
Q |
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| T |
30393638 |
atcaggaccaatattttgatacatgcatatacatttttggatgtaaactgctattcatatacattccccgtgctcatgaacttttatgcatttcattttc |
30393737 |
T |
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| Q |
120 |
aatcaacatgctatggttgagttctgac----aggtttgttagagtcatatattatatttactaattaaaaaagttgtctcatt-----cctaccatagc |
210 |
Q |
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| T |
30393738 |
aatcaacatgctatggttgagttctgactgacagggttgttagagtcatatattatatttactaattaaaaaagttgtctcattccattcctaccatagc |
30393837 |
T |
|
| Q |
211 |
tttcaaatggtaactaaatttgtgtgtaactatatatatacagaattccaaagttcacatcctaaattgtatgtatgagttaccgtgttttaaaagctac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393838 |
tttcaaatggtaactaaatttgtgtgtaactatatatatacagaattccaaagttcacatcctaaattgtatgtatgagttaccgtgttttaaaagctac |
30393937 |
T |
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| Q |
311 |
cagagaataaaactgctgccatgcggattttgatgtcatattctt |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30393938 |
cagagaataaaactgctgccatgcggattttgatgtcattttctt |
30393982 |
T |
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