View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_high_32 (Length: 250)
Name: NF17125_high_32
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_high_32 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 2144646 - 2144885
Alignment:
| Q |
11 |
cacagacatttctgattaactaagcacttaatttcgttacacataattttaacatcaaacgatgaattttatcaaaaacttctcaaaatttcgataatta |
110 |
Q |
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| T |
2144646 |
cacagacatttctgattaactaagcacttaattttgttacacataattttaacatcaaacaatgaattttatcaaaaacttctcaaaatttcgataatta |
2144745 |
T |
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| Q |
111 |
atccttcagttcgatcattagcatttcaaatctacaaaaatttaaacaaatatcacataatcaaaaagaacagaaacattttccattaactaagaactta |
210 |
Q |
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| T |
2144746 |
atccttcagttcgattattagcatttcaaatctacaaaaatttaaacaaatatcacataatcataaagaacagaaacattttccattaactaagaactta |
2144845 |
T |
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| Q |
211 |
attttgctacacttttttaacatcaaacaataaatttcat |
250 |
Q |
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| T |
2144846 |
attttgctacacttttttaacatcaaacaataaatttcat |
2144885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 2086626 - 2086773
Alignment:
| Q |
16 |
acatttctgattaactaagcacttaatttcgttacacataattttaacatcaaacgatgaattttatcaaaaacttctcaaaatttcgataattaatcct |
115 |
Q |
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| T |
2086626 |
acatttctgatcaactaaggatttaatttcgttacaatt--tttcaacagcaaacaataaatttcatcaaaaacatctcaaaatttcgataaattttcct |
2086723 |
T |
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| Q |
116 |
tcagttcgatcattagcatttcaaatctacaaa-aatttaaacaaatatc |
164 |
Q |
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| T |
2086724 |
tcatttcagttattggcatttcaaatctacaaacaattgaaataaatatc |
2086773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 2086607 - 2086690
Alignment:
| Q |
167 |
ataatcaaaaagaacagaaacattttccattaactaagaacttaattttgctacacttttttaacatcaaacaataaatttcat |
250 |
Q |
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| T |
2086607 |
ataatcataaataacagaaacatttctgatcaactaaggatttaatttcgttacaatttttcaacagcaaacaataaatttcat |
2086690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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