View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17125_high_33 (Length: 240)
Name: NF17125_high_33
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32273343 - 32273571
Alignment:
| Q |
1 |
taacacaacccaaaagaacagaatccacac------caacaccaacaatttcatcataatccgtctcctcaaccaacaacaattccttaaacaaacaaac |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
32273343 |
taacacaacccaaaagaacagaatccacaccaacaccaacaccaacaatttcatcataatccgtctcatcaaccaacaaaaattccttaaacaaaaaaac |
32273442 |
T |
|
| Q |
95 |
agcttcccgtgcacgctcattttgaacatacccagaaatcatcgaagtccaagaaacaacatttctttcaggaatttcatcgaacagtttccgggcatcg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32273443 |
agcttcccgtgcacgctcattttgaacatacccagaaatcatcgaagtccaagaaacaacatttctttcaggaatttcatcgaacagtttccgggcatcg |
32273542 |
T |
|
| Q |
195 |
ttcaaatagccacatttagagtacatatc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32273543 |
ttcaaatagccacatttagagtacatatc |
32273571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University