View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_high_35 (Length: 239)
Name: NF17125_high_35
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 39000247 - 39000125
Alignment:
| Q |
84 |
atacaaataaaaaatacaagccaaatgttgttagatctggaactatgaggaaagaacagctccaagtctaactctattgcattgtgtgcaacattgcggg |
183 |
Q |
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| T |
39000247 |
atacaaataaaaaatacaagccaaatgttgttagatctggaactatgaggaaagaacagctccaagtctaactctattgcattgtgtgcaacattgcggg |
39000148 |
T |
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| Q |
184 |
ggtacctgaatcagatttgatga |
206 |
Q |
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| T |
39000147 |
ggtacctgaatcagatttgatga |
39000125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 39000276 - 39000241
Alignment:
| Q |
21 |
gtataaactagaaccaatggaatcttatgatgcaaa |
56 |
Q |
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| T |
39000276 |
gtataaactagaaccaatggaatcttatgatacaaa |
39000241 |
T |
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