View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_high_39 (Length: 235)

Name: NF17125_high_39
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17125_high_39
NF17125_high_39
[»] chr5 (7 HSPs)
chr5 (11-221)||(10887994-10888204)
chr5 (55-219)||(10866214-10866378)
chr5 (55-219)||(10873927-10874091)
chr5 (55-219)||(10878998-10879162)
chr5 (55-219)||(10884069-10884233)
chr5 (48-218)||(39675780-39675950)
chr5 (50-219)||(10045775-10045944)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 10888204 - 10887994
Alignment:
Q  11 caaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10888204 caaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttc 10888105  T
Q  111 ttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||| | |||||||||||||||||||| ||    
T  10888104 ttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgt 10888005  T
Q  211 ctaccttattg 221  Q
    |||||||||||    
T  10888004 ctaccttattg 10887994  T

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Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 10866214 - 10866378
Alignment:
Q  55 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 154  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10866214 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10866313  T
Q  155 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10866314 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat 10866378  T

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Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 10874091 - 10873927
Alignment:
Q  55 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 154  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10874091 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10873992  T
Q  155 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10873991 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat 10873927  T

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Target: chr5; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 10879162 - 10878998
Alignment:
Q  55 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 154  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10879162 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10879063  T
Q  155 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10879062 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat 10878998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 10884233 - 10884069
Alignment:
Q  55 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 154  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10884233 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10884134  T
Q  155 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10884133 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat 10884069  T

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Target: chr5; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 39675780 - 39675950
Alignment:
Q  48 cttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctac 147  Q
    |||||||||| || ||||||||| || ||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  39675780 cttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctac 39675879  T
Q  148 acctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctacctta 218  Q
    ||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||| | || |||||||||    
T  39675880 acctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctacctta 39675950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 10045775 - 10045944
Alignment:
Q  50 tcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacac 149  Q
    |||||||| || |||||||||||  ||||||| ||||| |||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| ||||    
T  10045775 tcttcactctacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacac 10045874  T
Q  150 ctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat 219  Q
    |||| || || ||||||||||||||||||  || | ||||||||||||| ||||||||| | ||||||||    
T  10045875 ctcttcatgttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttat 10045944  T

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