View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17125_high_40 (Length: 233)
Name: NF17125_high_40
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_high_40 |
 | |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 26049835 - 26050056
Alignment:
| Q |
13 |
tctcagatagtagctttataaatgaatcaaaattttagtacgtgaaatacagagttacaaaaccattcttcttactattgtttttcaactt-tttcagtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
26049835 |
tctcagatagtagctttataaatgaatcaaaattttagtacgtgaaatacagagctataaaaccattcttctgactattgtttttcaacttctttcagtt |
26049934 |
T |
|
| Q |
112 |
tcataatattaagtgtctgagtcacctgagttttgattactcatgtcttgataacctcggtacgcttaccgccgagaagacctgttgtattctgggggag |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26049935 |
tcataaaattaagtgtctgagtcacctgagttttgattactcgtgtcttgatagcctcggtacgcttaccgccgagaagacctgttgtattctgggggag |
26050034 |
T |
|
| Q |
212 |
ttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26050035 |
ttgcgcaattctgcggataatt |
26050056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 26053249 - 26053470
Alignment:
| Q |
13 |
tctcagatagtagctttataaatgaatcaaaattttagtacgtgaaatacagagttacaaaaccattcttcttactattgtttttcaactt-tttcagtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
26053249 |
tctcagatagtagctttataaatgaatcaaaattttagtacgtgaaatacagagctacaaaaccattcttctgactattgtttttcaacttctttcagtt |
26053348 |
T |
|
| Q |
112 |
tcataatattaagtgtctgagtcacctgagttttgattactcatgtcttgataacctcggtacgcttaccgccgagaagacctgttgtattctgggggag |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26053349 |
tcataaaattaagtgtctgagtcacctgagttttgattactcgtgttttgatagcctcggtacgcttaccgccgagaagacctgttgtattctgggggag |
26053448 |
T |
|
| Q |
212 |
ttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
26053449 |
ttgcgcaattctacggataatt |
26053470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 27074801 - 27075023
Alignment:
| Q |
12 |
ttctcagatagtagctttataaatgaatcaaaattttagtacgtgaaatacagagttacaaaaccattcttcttactattgtttttcaactt-tttcagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
27074801 |
ttctcagatagtagctttataaatgaatcaaaattttagtacgtgatatacaaagttacaaaaccattcttctgactattgtttttcaacttctttcagt |
27074900 |
T |
|
| Q |
111 |
ttcataatattaagtgtctgagtcacctgagttttgattactcatgtcttgataacctcggtacgcttaccgccgagaagacctgttgtattctggggga |
210 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27074901 |
ttcataaaattaagtgtctgagtcatctgagttttgattactcgtgtcttgatagcctcggtacgcttaccgccgagaagacctgttgtattctggggga |
27075000 |
T |
|
| Q |
211 |
gttgcgcaattctgcggataatt |
233 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27075001 |
gttgcgcaattctgcggataatt |
27075023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 27078165 - 27078386
Alignment:
| Q |
12 |
ttctcagatagtagctttataaatgaatcaaaattttagtacgtgaaatacagagttacaaaaccattcttcttactattgtttttcaactt-tttcagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
27078165 |
ttctcagatagtagctttataaatgaatcaaaattttagtacgtgatatacaaagttacaaaaccattcttctgactattgtttttcaacttctttcagt |
27078264 |
T |
|
| Q |
111 |
ttcataatattaagtgtctgagtcacctgagttttgattactcatgtcttgataacctcggtacgcttaccgccgagaagacctgttgtattctggggga |
210 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27078265 |
ttcataaaattaagtgtctgagtcacctgagttttgattactcgtgtcttgatagcctcggtacgcttaccgccgagaaga-ctgttgtattctggggga |
27078363 |
T |
|
| Q |
211 |
gttgcgcaattctgcggataatt |
233 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27078364 |
gttgcgcaattctgcggataatt |
27078386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 32896028 - 32896133
Alignment:
| Q |
13 |
tctcagatagtagctttataaatgaatcaaaattttagtacgtgaaatacagagttacaaaaccattcttcttactattgtttttcaactt-tttcagtt |
111 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
32896028 |
tctcagatagtacctttataaatgaatcaaaattttagtacgtgaaatacaaagttacaaaaccattcttctgactattgttttacaacttctttcagtt |
32896127 |
T |
|
| Q |
112 |
tcataa |
117 |
Q |
| |
|
|||||| |
|
|
| T |
32896128 |
tcataa |
32896133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 36612152 - 36612039
Alignment:
| Q |
121 |
taagtgtctgagtcacctgagttttgattactcatgtcttgataacctcggtacgcttaccgccgagaag-acctgttgtattctgggggagttgcgcaa |
219 |
Q |
| |
|
||||||||||||||| ||||||| | ||| | | |||||||||| |||||||||| ||||| |||||||| | | ||||||| |||||||||||||||| |
|
|
| T |
36612152 |
taagtgtctgagtcatctgagttattatttcccgtgtcttgatagcctcggtacgattaccaccgagaagaatttcttgtattatgggggagttgcgcaa |
36612053 |
T |
|
| Q |
220 |
ttctgcggataatt |
233 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
36612052 |
ttctgtgaataatt |
36612039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 32893871 - 32893797
Alignment:
| Q |
160 |
tgataacctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
||||| |||||||| | ||| |||||||| || ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32893871 |
tgatagcctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgcgcaattctgcggataatt |
32893797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 28703834 - 28703755
Alignment:
| Q |
155 |
tgtcttgataacctcggtacgcttaccgccgagaagacct-gttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||| ||||| |||||| || |||||||||||| || || |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
28703834 |
tgtcctgatagcctcggaactattaccgccgagatgaacttgttgtactttgggggagttgcgcaattctgcggataatt |
28703755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 206097 - 206230
Alignment:
| Q |
104 |
tttcagtttcataatattaagtgtctgagtcacctgagttttg----attactcatgtcttgataacctcggtacgcttaccgccgagaagacctgttgt |
199 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||||||||| |||||| |||||||||| ||||||||| |||||||||||||| || |||||| |
|
|
| T |
206097 |
tttcattttcacaaaattaagtgtctgagtcatctgagtttttttttattacttgtgtcttgatagcctcggtacacttaccgccgagaatacttgttgt |
206196 |
T |
|
| Q |
200 |
attctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||| |
|
|
| T |
206197 |
attctgggggagttgcgctattatgtggataatt |
206230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 43658879 - 43658958
Alignment:
| Q |
155 |
tgtcttgataacctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||| ||||| | ||||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43658879 |
tgtcctgatagcttcggtacgcttaccgtcgagaagaaccggttgtactctgggggagttgcgcaattctgcggataatt |
43658958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 38640768 - 38640726
Alignment:
| Q |
191 |
acctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
38640768 |
acctgttgtactctgggggagttgcacaattctgcggataatt |
38640726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 42528472 - 42528397
Alignment:
| Q |
159 |
ttgataacctcggtacgcttaccgccgagaagacct-gttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| || |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
42528472 |
ttgatagcctcggtacgcttaccgccgaaaagatcttgttgtattttgggggagttgcgcaattctgcagataatt |
42528397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 6799101 - 6799175
Alignment:
| Q |
160 |
tgataacctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||| ||||| ||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
6799101 |
tgatagcctcggtacgattaccgctgagaagaacctgtagtactttgggggagtcgcgcaattctgcggataatt |
6799175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 8996223 - 8996159
Alignment:
| Q |
170 |
ggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||| ||||||||| || || ||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8996223 |
ggtacgattaccgccgggatgaacctgttgtattttgggggagttgtgcaattctgcggataatt |
8996159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 8986754 - 8986686
Alignment:
| Q |
166 |
cctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||||| | ||||||||| || || ||| |||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
8986754 |
cctcggtatgattaccgccgggatgaaccttttgtatgctgggggagttgcgcaattctacggataatt |
8986686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 55480900 - 55480820
Alignment:
| Q |
154 |
atgtcttgataacctcggtacgcttaccgccgagaag-acctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
||||||||||| |||||||| | ||||| |||||||| | | |||||||| ||||||| ||| |||||| || |||||||| |
|
|
| T |
55480900 |
atgtcttgatagcctcggtatgattaccaccgagaagaatcggttgtattatgggggaattgtgcaattttgtggataatt |
55480820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 8363271 - 8363350
Alignment:
| Q |
155 |
tgtcttgataacctcggtacgcttaccgccgagaagacc-tgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||| ||||| |||||||||| ||||| | |||| |||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
8363271 |
tgtcctgatagcctcggtacgattacctctgagatgaccctgttgtactctggaggagttgcgcaattctgcggataatt |
8363350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 33357971 - 33358045
Alignment:
| Q |
160 |
tgataacctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||||||||||| | ||| |||||||| || ||||||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
33357971 |
tgataacctcggtatgattatcgccgagatgaacctgttgtactctggaggagttgcgcaattctacggataatt |
33358045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 7947 - 8021
Alignment:
| Q |
160 |
tgataacctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||| ||||||| | ||| |||||||| || ||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
7947 |
tgataaactcggtatgattatcgccgagatgaacctgttgtactctgggggagttgcgcaattttgcggataatt |
8021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 47323253 - 47323317
Alignment:
| Q |
170 |
ggtacgcttaccgccgagaagacc-tgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||| ||||| |||||||||| ||||||||||| |
|
|
| T |
47323253 |
ggtacgcttaccgccgagaagaacatgttgtactcttggggaattgcgcaattttgcggataatt |
47323317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 13016495 - 13016432
Alignment:
| Q |
171 |
gtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||| |||| ||||||||||| ||||||| |
|
|
| T |
13016495 |
gtacgcttaccgccgagaagaacctgttgtactatggggaagttacgcaattctgcagataatt |
13016432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 41455533 - 41455454
Alignment:
| Q |
155 |
tgtcttgataacctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||| ||||| |||||| | | ||||| |||||| || ||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
41455533 |
tgtcctgatagcctcggaatgattacctccgagatgaacctgttgtactttgggggagttgcgcaattctgcggataatt |
41455454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 41451850 - 41451770
Alignment:
| Q |
155 |
tgtcttgataacctcggtacgcttaccgccgagaaga-cctgttgtattctggggg-agttgcgcaattctgcggataatt |
233 |
Q |
| |
|
|||| ||||| |||||| | | |||||| ||||| || ||||||||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
41451850 |
tgtcctgatagcctcggaatgattaccgtcgagatgaacctgttgtactctggggggagttgcacaattctgcggataatt |
41451770 |
T |
|
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