View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_high_41 (Length: 231)
Name: NF17125_high_41
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 8537506 - 8537594
Alignment:
| Q |
132 |
attaacccaacaaagaaaatcattttctcatccacaccaaaaatcaaaataacctctctctgcaccacactcaaacgacactgtttcatc |
221 |
Q |
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| T |
8537506 |
attaacccaacaaagaaaat-attttcgcatccacaccaaaaatcaaaataacctctctctgcaccacactcaaatgacactgtttcatc |
8537594 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 8537391 - 8537420
Alignment:
| Q |
102 |
aacccataaactctcattcacttatccctt |
131 |
Q |
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| T |
8537391 |
aacccataaactctcattcacttatccctt |
8537420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 8395407 - 8395456
Alignment:
| Q |
83 |
aatctccccc-caaattcccaacccataaactctcattcacttatccctt |
131 |
Q |
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| T |
8395407 |
aatctccccctcaaatttccaacccataaactctcattcacttatccctt |
8395456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 8395341 - 8395373
Alignment:
| Q |
27 |
cagaaaattacaaaattaaaactctcattcatc |
59 |
Q |
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| T |
8395341 |
cagaaaattaccaaattaaaactctcattcatc |
8395373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 26798598 - 26798561
Alignment:
| Q |
94 |
aaattcccaacccataaactctcattcacttatccctt |
131 |
Q |
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| T |
26798598 |
aaatttccaacccataaactctcattcacttatccctt |
26798561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 26798677 - 26798644
Alignment:
| Q |
26 |
ccagaaaattacaaaattaaaactctcattcatc |
59 |
Q |
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| T |
26798677 |
ccagaaaattaccaaattaaaactctcattcatc |
26798644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 37200772 - 37200743
Alignment:
| Q |
83 |
aatctccccccaaattcccaacccataaac |
112 |
Q |
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| T |
37200772 |
aatctccccccaaattcccaacccataaac |
37200743 |
T |
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