View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_high_5 (Length: 484)

Name: NF17125_high_5
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17125_high_5
NF17125_high_5
[»] chr5 (9 HSPs)
chr5 (11-484)||(10887731-10888204)
chr5 (55-484)||(10866214-10866634)
chr5 (55-484)||(10873671-10874091)
chr5 (55-484)||(10878742-10879162)
chr5 (55-484)||(10883813-10884233)
chr5 (48-288)||(39675780-39676020)
chr5 (50-243)||(10045775-10045968)
chr5 (356-484)||(39676070-39676198)
chr5 (365-448)||(10046135-10046218)


Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Complemental strand, 10888204 - 10887731
Alignment:
Q  11 caaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10888204 caaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttc 10888105  T
Q  111 ttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10888104 ttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgt 10888005  T
Q  211 ctaccttattgcttttttcggcactgccttcatctttcattacgatgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtg 310  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||   ||||||||||| |||    
T  10888004 ctaccttattgctttcttcggcactgccttcatcattcattacgatgatgatgaagacgaagtagtcgacaattctgcaaaacccaccggaggagttgtg 10887905  T
Q  311 ccaaagaagctacctatgttaccaccaccgaaaatatctgaccagaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaa 410  Q
    || |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10887904 ccgaagaagctacctatgttaacaccaccgaagatatctgaccaaaaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaa 10887805  T
Q  411 ttccgtcttactcccttgagtcaaagctcggagattgccgtcgtgcagcaaagattaggaaccaagcagtggag 484  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10887804 ttccttcttactcccttgagtcgaagctcggagattgccgtcgtgcagcaaagattaggaaccaagcagtggag 10887731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 55 - 484
Target Start/End: Original strand, 10866214 - 10866634
Alignment:
Q  55 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 154  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10866214 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10866313  T
Q  155 cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg 254  Q
    |||||||||||| ||||||||||| | ||| | |||||||||||||||||||| |||||||||||  |||| ||||||| |||||||||| |||||||||    
T  10866314 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg 10866413  T
Q  255 atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca 354  Q
    |||| || |||||          |||||| ||||||||   ||   ||||||| |||| ||||||||||||| |||||| ||||| ||||| || |||||    
T  10866414 atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca 10866504  T
Q  355 gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgt 454  Q
     ||||||||||||||||||||||| ||||||||| |||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| |||    
T  10866505 aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgt 10866604  T
Q  455 gcagcaaagattaggaaccaagcagtggag 484  Q
    |||||||| |||||||||||||| ||||||    
T  10866605 gcagcaaatattaggaaccaagcggtggag 10866634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 55 - 484
Target Start/End: Complemental strand, 10874091 - 10873671
Alignment:
Q  55 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 154  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10874091 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10873992  T
Q  155 cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg 254  Q
    |||||||||||| ||||||||||| | ||| | |||||||||||||||||||| |||||||||||  |||| ||||||| |||||||||| |||||||||    
T  10873991 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg 10873892  T
Q  255 atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca 354  Q
    |||| || |||||          |||||| ||||||||   ||   ||||||| |||| ||||||||||||| |||||| ||||| ||||| || |||||    
T  10873891 atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca 10873801  T
Q  355 gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgt 454  Q
     ||||||||||||||||||||||| ||||||||| |||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| |||    
T  10873800 aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgt 10873701  T
Q  455 gcagcaaagattaggaaccaagcagtggag 484  Q
    |||||||| |||||||||||||| ||||||    
T  10873700 gcagcaaatattaggaaccaagccgtggag 10873671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 55 - 484
Target Start/End: Complemental strand, 10879162 - 10878742
Alignment:
Q  55 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 154  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10879162 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10879063  T
Q  155 cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg 254  Q
    |||||||||||| ||||||||||| | ||| | |||||||||||||||||||| |||||||||||  |||| ||||||| |||||||||| |||||||||    
T  10879062 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg 10878963  T
Q  255 atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca 354  Q
    |||| || |||||          |||||| ||||||||   ||   ||||||| |||| ||||||||||||| |||||| ||||| ||||| || |||||    
T  10878962 atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca 10878872  T
Q  355 gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgt 454  Q
     ||||||||||||||||||||||| ||||||||| |||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| |||    
T  10878871 aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgt 10878772  T
Q  455 gcagcaaagattaggaaccaagcagtggag 484  Q
    |||||||| |||||||||||||| ||||||    
T  10878771 gcagcaaatattaggaaccaagccgtggag 10878742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 55 - 484
Target Start/End: Complemental strand, 10884233 - 10883813
Alignment:
Q  55 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 154  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10884233 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10884134  T
Q  155 cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg 254  Q
    |||||||||||| ||||||||||| | ||| | |||||||||||||||||||| |||||||||||  |||| ||||||| |||||||||| |||||||||    
T  10884133 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg 10884034  T
Q  255 atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca 354  Q
    |||| || |||||          |||||| ||||||||   ||   ||||||| |||| ||||||||||||| |||||| ||||| ||||| || |||||    
T  10884033 atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca 10883943  T
Q  355 gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgt 454  Q
     ||||||||||||||||||||||| ||||||||| |||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| |||    
T  10883942 aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgt 10883843  T
Q  455 gcagcaaagattaggaaccaagcagtggag 484  Q
    |||||||| |||||||||||||| ||||||    
T  10883842 gcagcaaatattaggaaccaagccgtggag 10883813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 48 - 288
Target Start/End: Original strand, 39675780 - 39676020
Alignment:
Q  48 cttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctac 147  Q
    |||||||||| || ||||||||| || ||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  39675780 cttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctac 39675879  T
Q  148 acctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatcttt 247  Q
    ||||||||| ||||||||| |||| |||||| ||||| ||||||||||||| |||| | |  |||||||||  ||||| || |||  |||||||||| ||    
T  39675880 acctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttcatcctt 39675979  T
Q  248 cattacgatgatgatgaagacgaagttgtcgacatttctgc 288  Q
    ||||||||||| || ||||| |||||||  |||||| ||||    
T  39675980 cattacgatgaagaagaagatgaagttgctgacattgctgc 39676020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 50 - 243
Target Start/End: Original strand, 10045775 - 10045968
Alignment:
Q  50 tcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacac 149  Q
    |||||||| || |||||||||||  ||||||| ||||| |||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| ||||    
T  10045775 tcttcactctacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacac 10045874  T
Q  150 ctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcat 243  Q
    |||| || || |||||| ||||||||||||  | ||| ||||||||||| ||||||||  | |||||||| ||||| ||||||| || ||||||    
T  10045875 ctcttcatgttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttcat 10045968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 356 - 484
Target Start/End: Original strand, 39676070 - 39676198
Alignment:
Q  356 aaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgtg 455  Q
    |||||| ||||||||||||| || |||||||| ||||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||    
T  39676070 aaagttttgtccatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtg 39676169  T
Q  456 cagcaaagattaggaaccaagcagtggag 484  Q
    | ||   ||||||||||||||| ||||||    
T  39676170 ctgctgtgattaggaaccaagctgtggag 39676198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 448
Target Start/End: Original strand, 10046135 - 10046218
Alignment:
Q  365 tccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgc 448  Q
    ||||||||||| || ||||||||| ||||||||||| | ||  |||||||||| ||||| ||||| ||||| ||||||||||||    
T  10046135 tccatggaagatgacgaggttgtccgtgcggtggtaaccggtacaattccgtcatactcgcttgaatcaaaactcggagattgc 10046218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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