View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_low_1 (Length: 566)

Name: NF17125_low_1

Description: NF17125

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17125_low_1

[»] scaffold0391 (1 HSPs)

Alignment Details

Target: scaffold0391 (Bit Score: 351; Significance: 0; HSPs: 1)

Name: scaffold0391

Description:

Target: scaffold0391; HSP #1

Raw Score: 351; E-Value: 0

Query Start/End: Original strand, 26 - 555

Target Start/End: Complemental strand, 5861 - 5329

Alignment:

Q	26	atcacacttagacctaaaaataagtatatgatagataacatgtaaggtttagactcnnnnnnnncaactattgttaaacttaaa-cnnnnnnnatgaaaa	124	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|
T	5861	atcacaccgagacctaaaaataagtatatgatagataacatgtaaggtttagactcttttttttcaactattgttaaacttaaaactttttttatgaaaa	5762	T

Q	125	ctcgagcataaattttgcaagtctatcttagttcatctataatatttgacatggtcgttttt-agcatttacataacgtcttgaatannnnnnngaatga	223	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	5761	ctcgagcataaactttgcaagtctatcttagttcatctataatatttgacatggtcgttttttagcatttacataacgtcttgaatatttttttgaatga	5662	T

Q	224	aaaaagttgatagttagtttgtttgattaatattattcatttgtttgaatttgaactctacaccttcaactannnnnnnctcttaactcaaaccaattga	323	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|
T	5661	aaaaaattgatagttagtttgtttgattaatattattcatttgtttgaatttgaactctacacctccagctatttttttctcttaactcaaaccagttaa	5562	T

Q	324	attatatatttttcctatcgtggaaacttgtttttggctggttacagccgttgcatccggtgttttacaaattagaattgtctccctgttaaattgaata	423	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5561	attatatatttttcctatcgtggaaacttgtttttggctggttacagccgttgcatccggtgttttacaaattagaattgtctccctgttaaattgaata	5462	T

Q	424	tgagtgtaaagtctcatacattatctttatatcacatgtgtgatcttttaaacacag-aaagnnnnnnnnnnnnnccttgatatcgtaagcgcatttctt	522	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5461	tgagtgtaaagtctcatacattatctttatatcacatgtgtgatcttttaaacacagaaaagaaaaaagaaaaaaccttgatatcgtaagcgcatttctt	5362	T

Q	523	ccttttatacccactactgtcatagaataatct	555	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5361	ccttttatacccactactgtcatagaataatct	5329	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]