View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_11 (Length: 411)
Name: NF17125_low_11
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 161 - 401
Target Start/End: Complemental strand, 37147131 - 37146893
Alignment:
| Q |
161 |
ttgagtagttacgagttgggtttctcatttgtggtcaatgtttctgacttgtgattctattattcctttttagagttgttaagcacatcaagtttcaaag |
260 |
Q |
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| T |
37147131 |
ttgagtagttacgagttgggtttctcattcgtggtcaatgtttctgacttgtgattctcttattcctttttagagttgttaagcacatcaagtttcaaag |
37147032 |
T |
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| Q |
261 |
tttgttttgtcgacgccgcaccggtcccgctgtaacttgtgatatcttgttcattctttatgtttgattgagattgttggactcagaagagtgttctgct |
360 |
Q |
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| T |
37147031 |
tttgttttgtcgacgccgcaccggt-ccgctgtaacttgtgatatcttgttcatt-tttatgtttgattgagattgttggactcagaagagtgttctgct |
37146934 |
T |
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| Q |
361 |
tgctgcgttgtagggcgtttggttcttggtttcgttctgtg |
401 |
Q |
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| T |
37146933 |
tgctgcgttgtagggcgtttggttcttggtttcgttctgtg |
37146893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 37147299 - 37147161
Alignment:
| Q |
21 |
cacatgtctttcaatggtgggttttaaccggcgacaaatctgttggttttaaggtagtnnnnnnnnnn-tcaggatttttgttaagaactggataggttc |
119 |
Q |
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| T |
37147299 |
cacatgtctttcaatggtgggttttaaccggcgacaaatctgttggttttaaggtagtaaaaaaaaaaatcaggatttttgttaagaactgaataggttc |
37147200 |
T |
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| Q |
120 |
tttgatggttaaagctccaggatccggtgaatgttacat |
158 |
Q |
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| T |
37147199 |
tttgatggttaaagctccaggatccggtgaatgttacat |
37147161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 32040 - 31961
Alignment:
| Q |
191 |
gtggtcaatgtttctgacttgtgattctattattcctttttagagttgttaagcacatcaagtttcaaagtttgttttgt |
270 |
Q |
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| T |
32040 |
gtggtcgatgtgtttgacttttgattctttgattcctttttagagttgttgagcattgctagtttcatagtttgttttgt |
31961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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