View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_15 (Length: 377)
Name: NF17125_low_15
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 34792959 - 34793316
Alignment:
| Q |
1 |
cgaggtgacaatcacggtcttagatatttgaatataatttatcaatggannnnnnnnccatgaggagaaagggatagatagaaaaaccattaagagtgct |
100 |
Q |
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| T |
34792959 |
cgaggtgacaatcacggtcctagatatttgaatataatttatcaatggattttttttccatgaggagaaagggatagatagaaaaaccattaagagtgct |
34793058 |
T |
|
| Q |
101 |
tttaagtcattttgtgtgagctcgaattctgtaagaccatcgttctgaagttgaaggagaatgtcaaggaaatctttcttcttagggtccctcctagaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34793059 |
tttaagtcattttgtgtgagctcgaattctgtaagaccatcgtcctgaagttgaaggagaatgtcaaggaaatctttcttcttagggtccctcctagaca |
34793158 |
T |
|
| Q |
201 |
tcttatgctctacaattacacgatcaaggaaatcatccatttcttcagaagaatccttaannnnnnnnaattcggccagtgagaacatcaacccaaccta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
34793159 |
tcttatgctctacaattacacgatcaaggaaatcatccatttcttcagaagaatccttaattttttttaatttggccagtgagaacatcaacccaaccta |
34793258 |
T |
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| Q |
301 |
acataggaaacaaatctcccatactaaaatctaaaacttgagacgttatcttcctgcc |
358 |
Q |
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| T |
34793259 |
acataggaaacaaatctcccatactaaaatctaaaacttgagacgttatcctcctgcc |
34793316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 60 - 358
Target Start/End: Complemental strand, 34417396 - 34417100
Alignment:
| Q |
60 |
atgaggagaaagggatagatagaaaaaccattaagagtgcttttaagtcattttgtgtgagctcgaattctgtaagaccatcgttctgaagttgaaggag |
159 |
Q |
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|||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || || |||| | ||||||| | ||||||||||||||| |
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| T |
34417396 |
atgatgagaaagggataga-agaaaaaccattaacagtgcttttaagtcattctgtgtgaggtctaactctgaacgaccatcatcctgaagttgaaggag |
34417298 |
T |
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| Q |
160 |
aatgtcaaggaaatctttcttcttagggtccctcctagacatcttatgctctacaattacacgatcaaggaaatcatccatttcttcagaagaatcctta |
259 |
Q |
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|||||| |||||||||||||| || ||||||||| ||| |||||||||||| |||||||||| ||||| |||||||| |||||||||| ||| ||||| |
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| T |
34417297 |
aatgtcgaggaaatctttcttgttggggtccctcgtagccatcttatgctcgacaattacactatcaaagaaatcattcatttcttcaaaagtggcctta |
34417198 |
T |
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| Q |
260 |
annnnnnnnaattcggccagtgagaacatcaacccaacctaacataggaaacaaatctcccatactaaaatctaaaacttgagacgttatcttcctgcc |
358 |
Q |
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| |||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||| | ||||| ||||||| |
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| T |
34417197 |
a-aatttttaatttggccagtgagaacatcaacccaacccaacaaaggaaacaaatctcctatactaagatctaaaacttgagccattatcctcctgcc |
34417100 |
T |
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