View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_low_16 (Length: 374)

Name: NF17125_low_16
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17125_low_16
NF17125_low_16
[»] chr3 (8 HSPs)
chr3 (4-356)||(51942147-51942499)
chr3 (126-341)||(5155341-5155554)
chr3 (127-334)||(46478370-46478575)
chr3 (126-235)||(46550107-46550216)
chr3 (127-203)||(46469899-46469975)
chr3 (170-244)||(47398186-47398260)
chr3 (170-207)||(46490237-46490274)
chr3 (126-200)||(47414786-47414860)
[»] chr8 (2 HSPs)
chr8 (127-254)||(9693206-9693333)
chr8 (125-255)||(9677463-9677593)
[»] chr4 (2 HSPs)
chr4 (142-261)||(35160670-35160789)
chr4 (127-204)||(35154336-35154413)
[»] chr2 (2 HSPs)
chr2 (170-223)||(20143699-20143752)
chr2 (170-223)||(20169758-20169811)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 4 - 356
Target Start/End: Complemental strand, 51942499 - 51942147
Alignment:
Q  4 ggctaatgaaataaaaactaattgtttatgatggtatatcttttagttaattaacatgaaataaaagcagtgcatagattgtagggaaaagaataagata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942499 ggctaatgaaataaaaactaattgtttatgatggtatatcttttagttaattaacatgaaataaaagcagtgcatagattgtagggaaaagaataagata 51942400  T
Q  104 tacaatatatataccttgaacatgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942399 tacaatatatataccttgaacatgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttt 51942300  T
Q  204 tttctatccatacaccatcggcgaaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttg 303  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942299 tttctatccatacaccatcgacgaaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttg 51942200  T
Q  304 agatgatcagttgatttggatcgtaggaagtctagaagttgctgccgtgtggg 356  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  51942199 agatgatcagttgatttggatcgtaggaagtcgagaagttgctgcggtgtggg 51942147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 126 - 341
Target Start/End: Complemental strand, 5155554 - 5155341
Alignment:
Q  126 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggc 225  Q
    |||||||||| |||  ||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| | |    
T  5155554 tgaaatcaacagaaagcaaagtggccttataatcagaggacacgatttctttgaaggaaggttgaagagaaagggtttgttcaacccatacaccattgac 5155455  T
Q  226 gaaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatc 325  Q
    ||||||||   |||||||||| |  | |||||||||| |||||||   | ||||||||| || ||||| || | ||||||||| ||||| ||||||||      
T  5155454 gaaggagaatcgaggtccacctgtgggagcagcgtcgaagagcac--gacagaaacaagttgagaggcaagatcgttgagatggtcagtggatttggaca 5155357  T
Q  326 gtaggaagtctagaag 341  Q
    | |||||||| |||||    
T  5155356 ggaggaagtcgagaag 5155341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 334
Target Start/End: Complemental strand, 46478575 - 46478370
Alignment:
Q  127 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcg 226  Q
    |||||||||||||| |||||  || ||| | | ||  |||| |||||||| ||||||||||||||||||||||||||  || | ||| ||||| ||| ||    
T  46478575 gaaatcaacggaagacaaagctgctttaaaatgagtggacacgatttgttggaaggaaggttgaagagaaagggtttgatcaacccaaacaccgtcgacg 46478476  T
Q  227 aaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatcg 326  Q
    || |||||| |||| |||||||| | || ||||||||||||   |  |  ||||| |||||||| |||| ||||||||||||||| || ||||||||| |    
T  46478475 aaagagaggagaggaccaccggcgggagaagcgtcggagag--gatgacggaaacgagctgtgaagcgaagtagttgagatgatcggtggatttggattg 46478378  T
Q  327 taggaagt 334  Q
     |||||||    
T  46478377 aaggaagt 46478370  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 46550107 - 46550216
Alignment:
Q  126 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggc 225  Q
    |||||||||| |||||||||||||||||||| ||||  | |||  ||| ||  ||||||||||||||||||||||||| ||| |||||  |||||| | |    
T  46550107 tgaaatcaactgaagccaaagtggccttataatcagtagccatagttttttcaaaggaaggttgaagagaaagggtttgttcaatccacgcaccattgac 46550206  T
Q  226 gaaggagagg 235  Q
    ||| ||||||    
T  46550207 gaaagagagg 46550216  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 46469975 - 46469899
Alignment:
Q  127 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttt 203  Q
    |||||||||||||||||||||||| ||||| ||||    |||  ||| |||||||||||||||||||||||||||||    
T  46469975 gaaatcaacggaagccaaagtggctttataatcagtaaccattgtttctttgaaggaaggttgaagagaaagggttt 46469899  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 47398186 - 47398260
Alignment:
Q  170 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcgaaggagaggtgaggtcca 244  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| || |||| | |||| |||||| ||||||||    
T  47398186 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccacacgccattgacgaaagagaggcgaggtcca 47398260  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 46490274 - 46490237
Alignment:
Q  170 atttgtttgaaggaaggttgaagagaaagggttttttc 207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46490274 atttgtttgaaggaaggttgaagagaaagggttttttc 46490237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 47414786 - 47414860
Alignment:
Q  126 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaaggg 200  Q
    ||||||| ||||||| ||||| ||||||||| ||||   | | |||||||||||||||||||| |||||||||||    
T  47414786 tgaaatctacggaagacaaagcggccttataatcaggatagacgatttgtttgaaggaaggtttaagagaaaggg 47414860  T

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Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 9693206 - 9693333
Alignment:
Q  127 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcg 226  Q
    ||||||||| |||| |||||  |||||||| ||||  |||||| ||| |||||||||||||||||||||||||||||| |||| ||| ||||||| ||||    
T  9693206 gaaatcaacagaagacaaagcagccttataatcagtagacatggtttctttgaaggaaggttgaagagaaagggttttctctacccacacaccattggcg 9693305  T
Q  227 aaggagaggtgaggtccaccggcagaag 254  Q
    || ||||||||||| ||||||| |||||    
T  9693306 aaagagaggtgaggaccaccggaagaag 9693333  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 255
Target Start/End: Original strand, 9677463 - 9677593
Alignment:
Q  125 atgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcgg 224  Q
    ||||||||||| ||||| | |||||||||||| || |  |||||| ||| || |||||||||||||||||||||| |||| || | ||||||||||| ||    
T  9677463 atgaaatcaacagaagcgagagtggccttataatcggtagacatggtttcttggaaggaaggttgaagagaaaggtttttctccacccatacaccattgg 9677562  T
Q  225 cgaaggagaggtgaggtccaccggcagaagc 255  Q
    |||| |||||| |||| ||||||| ||||||    
T  9677563 cgaaagagaggcgaggaccaccggaagaagc 9677593  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 35160789 - 35160670
Alignment:
Q  142 caaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcgaaggagaggtgaggt 241  Q
    ||||||||||||||| ||    |||| ||||||||||||||||| ||||||||||||||||||||| | ||| ||||| ||| |||| |||||||||||     
T  35160789 caaagtggccttataatcttcagacacgatttgtttgaaggaagattgaagagaaagggttttttccagccaaacaccgtcgacgaaagagaggtgagga 35160690  T
Q  242 ccaccggcagaagcagcgtc 261  Q
    ||||||| ||||| ||||||    
T  35160689 ccaccggaagaagtagcgtc 35160670  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 35154413 - 35154336
Alignment:
Q  127 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggtttt 204  Q
    ||||||||| |||| |||||||||||| || || |  | || ||| |||||||||||||||||| |||||||||||||    
T  35154413 gaaatcaacagaagacaaagtggccttgtaatcggtagtcacgatatgtttgaaggaaggttgaggagaaagggtttt 35154336  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 20143752 - 20143699
Alignment:
Q  170 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcg 223  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  20143752 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcg 20143699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 20169758 - 20169811
Alignment:
Q  170 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcg 223  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  20169758 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcg 20169811  T

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