View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_18 (Length: 367)
Name: NF17125_low_18
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 81 - 350
Target Start/End: Original strand, 26358012 - 26358289
Alignment:
| Q |
81 |
actttataattgtacttaataaatcaatttgataaaataattattttacttt--------gtatatcgtttaatttgaaaggtggggttgagtacaaact |
172 |
Q |
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| T |
26358012 |
actttataattgtacttaataaatcaatttggtaaaataattattgtatttttttgaagagtatatcgtttaatttgaaaggtggggttgagtacaaact |
26358111 |
T |
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| Q |
173 |
actagacaagggtccatttgtcctttaattctagagcagccggcaacaagttgcatcagattacaaat-catgttcacttaattcttaaattgattgcaa |
271 |
Q |
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|||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26358112 |
actagagaagggttcatttgtcctttacttctagagcagccggcaacaagttgcatcagattacaaatacatgttcacttaattcttaaattgattgcaa |
26358211 |
T |
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| Q |
272 |
atgcaaattgagaagtggcaatgcatgcataaatactatacaaattnnnnnnnngagataaatgtacttatatcctaat |
350 |
Q |
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|| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
26358212 |
attcaacttgagaagtggcaatgcatgcatatatactatacaaatt-aaaaaaagagataaatgtacttatatcctaat |
26358289 |
T |
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