View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_2 (Length: 539)
Name: NF17125_low_2
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 305 - 520
Target Start/End: Complemental strand, 29945269 - 29945054
Alignment:
| Q |
305 |
agttttcagagactaacgtgatcttaattcacgtggattatgtttgtatcgtgaattgggaactagtttcattcctcaaaccacaacaaaaagaacagaa |
404 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29945269 |
agttttcagagactaacgtgatcttaattcacatggattatgtttgtatcgtgaattgggaactagtttcattcctcaaaccacaacaaaaagaacagaa |
29945170 |
T |
|
| Q |
405 |
gtaaaacaaacgaattaaagatttaaatgaatgagggaagtagaagttatggtagaaaaagtcgagaggaaaataatacaactcaaagtcaatgttgtat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29945169 |
gtaaaacaaacgaattaaagatttaaatgaatgagggaagtagaagttatggtagaaaaagtagagaggaaaataatacaactcaaagtcaatgttgtat |
29945070 |
T |
|
| Q |
505 |
gtgatgatgttggtag |
520 |
Q |
| |
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||||||||||||||| |
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|
| T |
29945069 |
atgatgatgttggtag |
29945054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 29945605 - 29945387
Alignment:
| Q |
13 |
cataggagcaaaagaaaagagtaataaatcaaaagcaaaagagatttgaacgaagttttagggttactaaccagaggggagtcaccgccggagagaggcg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29945605 |
cataggagcaaaagaaaagagtaataaattaaa-gcaaacgagatttgaacgaagttttagggttactaaccagaggggagtcatcgccggagagaggcg |
29945507 |
T |
|
| Q |
113 |
tagtgattctcaatttgaagtgaagtaagttgtaaacagaagaatg------aacaacaacaaatacaacaggaatcgcacaacaccctttcttgtgctt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
29945506 |
tagtgattctcaatttgaagtgaagtaagttgtaaacagaagaatgaataacaacaacaacaaatacaacagcaatcgcacaacaccctttctcgtgctt |
29945407 |
T |
|
| Q |
207 |
ggggtttacaggagtagtag |
226 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
29945406 |
ggggtttacaggagtagtag |
29945387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 29945355 - 29945299
Alignment:
| Q |
251 |
ctagttccaccccataaatttcacgttacaccccaaattaccaaaaatgcccttagt |
307 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29945355 |
ctagttccatcccataaattttacgttacaccccaaattaccaaaaatgcccttagt |
29945299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 8e-87; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 29609596 - 29609312
Alignment:
| Q |
13 |
cataggagcaaaagaaaagagtaataaatcaaaagcaaaagagatttgaacgaagttttagggttactaaccagaggggagtcaccgccggagagaggcg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
29609596 |
cataggagcaaaagaaaagagtaataaatcaaa-gcaaaagagatttgaacg---------ggttactaaccagaggggagtcacagccggagagaggcg |
29609507 |
T |
|
| Q |
113 |
tagtgattctcaatttgaagtgaagtaagttgtaaacagaagaatgaacaacaacaaatacaacaggaatcgcacaacaccctttcttgtgcttggggtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
29609506 |
tagtgattctcaatttgaagtgaagtaagttataaacagaagaatgaacaacaacaaatacaacacgaatcgcacaacaccctttcttgtgcttgaggtt |
29609407 |
T |
|
| Q |
213 |
tacaggagtagtagnnnnnnnnnnnnnnnnnnnnnnnnctagttccaccccataaatttcacgttacaccccaaattaccaaaaatgcccttagt |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
29609406 |
tacaggagtagtagttttttcatttttattttttatttctagttccaccccataaattttacgttacaccccaaattaccaaaaatgcccttagt |
29609312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 29569276 - 29569395
Alignment:
| Q |
13 |
cataggagcaaaagaaaagagtaataaatcaaaagcaaaagagatttgaacgaagttttagggttactaaccagaggggagtcaccgccggagagaggcg |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
29569276 |
cataggagcaaaataaaagagtaataaatcaaa-gcaaaagagatttgaacgaagttttagggttactaaccagaggggagtcacagccggagagaggcg |
29569374 |
T |
|
| Q |
113 |
tagtgattctcaatttgaagt |
133 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
29569375 |
tagtgattctgaatttgaagt |
29569395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 29571831 - 29571950
Alignment:
| Q |
13 |
cataggagcaaaagaaaagagtaataaatcaaaagcaaaagagatttgaacgaagttttagggttactaaccagaggggagtcaccgccggagagaggcg |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29571831 |
cataggagcaaaataaaagagtaataaatcaaa-gcaaaagagatttgaacgaagttttagggttactaaccagaggggagtcacagccggagagaggcg |
29571929 |
T |
|
| Q |
113 |
tagtgattctcaatttgaagt |
133 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
29571930 |
tagtgattctgaatttgaagt |
29571950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 29578620 - 29578739
Alignment:
| Q |
13 |
cataggagcaaaagaaaagagtaataaatcaaaagcaaaagagatttgaacgaagttttagggttactaaccagaggggagtcaccgccggagagaggcg |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
29578620 |
cataggagcaaaataaaagagtaataaatcaaa-gcaaaagagatttgaacgaagttttagggttactaaccagaggggagtcacagccggagagaggcg |
29578718 |
T |
|
| Q |
113 |
tagtgattctcaatttgaagt |
133 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
29578719 |
tagtgattctgaatttgaagt |
29578739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 29610464 - 29610581
Alignment:
| Q |
13 |
cataggagcaaaagaaaagagtaataaatcaaaagcaaaagagatttgaacgaagttttagggttactaaccagaggggagtcaccgccggagagaggcg |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
29610464 |
cataggaacaaaagaaaagagtaataaatcaaa-gcaa--gagatttgaacgaagttttagggttactaaccagaggggagtcacagccggagagaggcg |
29610560 |
T |
|
| Q |
113 |
tagtgattctcaatttgaagt |
133 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29610561 |
tagtgattctcaatttgaagt |
29610581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 29609241 - 29609194
Alignment:
| Q |
473 |
gaaaataatacaactcaaagtcaatgttgtatgtgatgatgttggtag |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29609241 |
gaaaataatacaactcaaagtcaatgttgtatgtgatgatgttggtag |
29609194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 11067061 - 11067018
Alignment:
| Q |
342 |
ttatgtttgtat-cgtgaattgggaactagtttcattcctcaaa |
384 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
11067061 |
ttatgtttgtatacgtgaattgagaactagtttcattcctcaaa |
11067018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 463
Target Start/End: Original strand, 3213811 - 3213844
Alignment:
| Q |
430 |
aatgaatgagggaagtagaagttatggtagaaaa |
463 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
3213811 |
aatgaatgagggaagtagaagtgatggtagaaaa |
3213844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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