View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_20 (Length: 349)
Name: NF17125_low_20
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 2549333 - 2549659
Alignment:
| Q |
9 |
cacattacaacacaaatttgaatttcaacaatgcattaagtatannnnnnnnnccaataaattagtttgtaattaatgacatggtagaaatgtttatttt |
108 |
Q |
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| T |
2549333 |
cacattacaacacaaatttgaatttcaacaatgcattaagtatatttttttc-ccaataaattagtttgtaattaatgacatggtagaaatgtttatttt |
2549431 |
T |
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| Q |
109 |
ccataaacatccagctattgaatgactttacagcttccctagatacaaactcataataataagatacgtattattgaatagcgggtgttacaaaatttat |
208 |
Q |
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| T |
2549432 |
ccataaacatccagctattgaatgactttacagcttccctagatacaaactcataataataagatatgtatttttga--agcgggtgttacaaaatttat |
2549529 |
T |
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| Q |
209 |
gctgaagtcattctccttcattgcacctgttgtttgaccaaacatggaagagacaccaaaagcgcatgaaataaaaaagaagacgaccaaaacattgcat |
308 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
2549530 |
gctgaagtcattctccttcattgaacctgttgttcgaccaaacatggaagagacaccaaaagcgtatgaaataaaaaagaagacgaccaaaa-attgcat |
2549628 |
T |
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| Q |
309 |
agtacaactagtatgtttggcacatcctatg |
339 |
Q |
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| T |
2549629 |
actataactagtatgtttggcacatcctatg |
2549659 |
T |
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