View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_21 (Length: 347)
Name: NF17125_low_21
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 12384199 - 12384392
Alignment:
| Q |
47 |
gagcattgctatttgttacgatggttaactacaagaaaggcaagaattacacatgtcnnnnnnnnnnnnncggaaccaacatatatcagtggtatgtggc |
146 |
Q |
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| T |
12384199 |
gagcattgctatttgttacgatggttaactacaagaaaggcaagaattacacatgccaaaaaaacaaaaacggaaccaacatatatcagtggtatgtggc |
12384298 |
T |
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| Q |
147 |
agaaatcaaggtgtgcttggagacaaactgaacggtgaggattcattcttgcttttcgttaaatgatgattcgtaataataagcatttcccttt |
240 |
Q |
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| T |
12384299 |
agaaatcaaggtgcgtttggagacaaactaaacagtgaggattcattcttgcttttcgttaaatgatgattcgtaataataagcatttcccttt |
12384392 |
T |
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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 11990183 - 11990239
Alignment:
| Q |
45 |
atgagcattgctatttgttacgatggttaactacaagaaaggcaagaattacacatg |
101 |
Q |
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| T |
11990183 |
atgagcaatgctatttgttacgatggttaactagaagaaaggcaagaattacacatg |
11990239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 11990330 - 11990279
Alignment:
| Q |
186 |
gattcattcttgcttttcgttaaatgatgattcgtaataataagcatttccc |
237 |
Q |
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| T |
11990330 |
gattcattcttacttttcgttaaataatgatccgtaataacaagcatttccc |
11990279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 11990360 - 11990411
Alignment:
| Q |
186 |
gattcattcttgcttttcgttaaatgatgattcgtaataataagcatttccc |
237 |
Q |
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| T |
11990360 |
gattcattcttgtaatttgttaaatgatgattcgtaataacaagcatttccc |
11990411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 26029242 - 26029292
Alignment:
| Q |
238 |
tttatttatactgatgttttttgttacagtttttgttactcaactaactga |
288 |
Q |
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| T |
26029242 |
tttatttatagtgatgttgtttgttacagtttttgttactcaactaactga |
26029292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 26029374 - 26029411
Alignment:
| Q |
282 |
taactgaattgccgaaatagcacaaagtatggaagtga |
319 |
Q |
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| T |
26029374 |
taactgaattgccgaaataccacaaagtatggaagtga |
26029411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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