View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_22 (Length: 336)
Name: NF17125_low_22
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 36152141 - 36151826
Alignment:
| Q |
8 |
aagcaaaggttctgtttctgtgcttatttgtggagatcaagataaacctgctttgataacttacccagatgtagctcttaattgtaattattcttactta |
107 |
Q |
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| T |
36152141 |
aagcaaaggttctgtttctgtgcttatttgtggagatcaagataaacctgctttgataacttacccagatgtagctcttaattgtaattattcttactta |
36152042 |
T |
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| Q |
108 |
ttattcatattgctttgctttttatgtgtattcaatatgttgtatcagaatatgaatgtcaacaacaccagattttgatattacaaacatattggctatg |
207 |
Q |
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| T |
36152041 |
ttattcatattgctttgctttttatgtgtattcaatatgttgtatcagaatatgaatgtcaacaacaccagattttgatattacaaacatattggctatg |
36151942 |
T |
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| Q |
208 |
gtttttgaaatttggacaattgctttttgcagatttgtcatgttttcagggtctgttgttctgtccagaagcagcttctttgatgcttcataatttctgc |
307 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151941 |
gtttttgaaatttggacaattgttttttgcagatttgtcatgttttcagggtctgttgttctgtccagaagcagcttctttgatgcttcataatttctgc |
36151842 |
T |
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| Q |
308 |
atttatcacattgatg |
323 |
Q |
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| T |
36151841 |
atttatcacattgatg |
36151826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 25464898 - 25464944
Alignment:
| Q |
8 |
aagcaaaggttctgtttctgtgcttatttgtggagatcaagataaac |
54 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25464898 |
aagcaaaggttctgtttctgtgcttatttgtagagatcaagataaac |
25464944 |
T |
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