View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_29 (Length: 262)
Name: NF17125_low_29
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 30314574 - 30314809
Alignment:
| Q |
9 |
caagaatattttggaggctgcctttaatgtaagcataccaacacactatttatttattttgtatactatatacagtataaggtataaattttcaaccatt |
108 |
Q |
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| T |
30314574 |
caagaatattttggaggctgcctttaatgtaagcataccaacacactatttatttattttgtatactatatacagtataaggtataaattttcaaccatt |
30314673 |
T |
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| Q |
109 |
atcatttatcaaaacatagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagagggtgcttatagaagag |
208 |
Q |
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| T |
30314674 |
atcatttatcaaaacatagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagcgggtccttattgaagag |
30314773 |
T |
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| Q |
209 |
caggagcaagagccgcacaggagaggccttagggatagg |
247 |
Q |
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| T |
30314774 |
caagagcca---caacacaggagaggccttagggatagg |
30314809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 30303686 - 30303923
Alignment:
| Q |
9 |
caagaatattttggaggctgcctttaatgtaagcataccaacacactatttatttattttgtatactatatacagtataaggtataaattttcaaccatt |
108 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | | ||||||||||||| |||||||||||||||||||| |
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| T |
30303686 |
caagaatattttggaggctgccttcaatgtaagcataccaacacactatttgtttatttcttttg-tatatacagtatatggtataaattttcaaccatt |
30303784 |
T |
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| Q |
109 |
atcatttatcaaaacatagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagagggtgcttatagaagag |
208 |
Q |
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| T |
30303785 |
atcatttatcaaaacgtagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagagggtgcttatagaagag |
30303884 |
T |
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| Q |
209 |
caggagcaagagccgcacaggagaggccttagggatagg |
247 |
Q |
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| T |
30303885 |
caggagcaagatccgcacaggagaggccttagggatagg |
30303923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 30291032 - 30291269
Alignment:
| Q |
9 |
caagaatattttggaggctgcctttaatgtaagcataccaacacactatttatttattttgtatactatatacagtataaggtataaattttcaaccatt |
108 |
Q |
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| T |
30291032 |
caagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattttgtata-tatata---tatatagtataaattttcgaccatt |
30291127 |
T |
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| Q |
109 |
atcatttatcaaaacatagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagagggtgcttatagaagag |
208 |
Q |
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| T |
30291128 |
atcatttatcaaaacatagtcattataatacctgtccttgcatatattgttacaaatacagtccaattacgaggagatagagagggtgcttatagaagag |
30291227 |
T |
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| Q |
209 |
caggagcaagagcc---gcacaggagaggccttagggatagg |
247 |
Q |
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| T |
30291228 |
caggagcaagagccacgacacaggagaggccttagggatagg |
30291269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 30298584 - 30298714
Alignment:
| Q |
114 |
ttatcaaaacatagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagagggtgcttatagaagagcagga |
213 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
30298584 |
ttatcaaaacatagtcattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagcatga |
30298683 |
T |
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| Q |
214 |
gcaagagcc---gcacaggagaggccttagg |
241 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
30298684 |
acaagagccacaacacaggagaggccttagg |
30298714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 30298503 - 30298561
Alignment:
| Q |
9 |
caagaatattttggaggctgcctttaatgtaagcataccaacacactatttatttattt |
67 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
30298503 |
caagaatattttggaggctgccttcaatgtaagcataccaacacagaatttatttattt |
30298561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 30286167 - 30286249
Alignment:
| Q |
162 |
aaatataggccaattatgaggagatagagagggtgcttatagaagagcaggagcaagagcc---gcacaggagaggccttagg |
241 |
Q |
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| T |
30286167 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagaatgaacaagagccacaacacaggagaggccttagg |
30286249 |
T |
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