View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_3 (Length: 517)
Name: NF17125_low_3
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 12 - 502
Target Start/End: Complemental strand, 15610444 - 15609955
Alignment:
| Q |
12 |
aaaggaagtagatgtgaaagtccaattgtgcgacgtgttagacgcaaatggaatatggatcaattttgttatatgattgacaaagatcaagataatatta |
111 |
Q |
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| T |
15610444 |
aaaggaagtagatgtgaaagtccaattgtgcgacgtgttagacgcaaatggaatatggatcaattttgttatatgattgacaaagatcaagataatatta |
15610345 |
T |
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| Q |
112 |
aggtatttgttgttgaatttatatgaaatagtaaataatattaagttgatgatcttattgtcaaattcactaatacttcttataacacatgtgatttctt |
211 |
Q |
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| T |
15610344 |
aggtatttgttgttgaatttatatgaaatagtaaataatattaagttgatgatcttattgtcaaattaactaatacttcttataacacatgtgatttctt |
15610245 |
T |
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| Q |
212 |
aagttgatgcaggtggagtgcaagaaggggatgaaaaaatggaaaagcttgaaaagtttttgatggtgatatatttgaatgaatttgctcaagtaaagga |
311 |
Q |
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| T |
15610244 |
aagttgatgcaggtggagtgcaagaaggggatgaaaaaatggaaaagcttgaaaagttgttgatggtgatatatttgaatgaatttgctcaagtaaagga |
15610145 |
T |
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| Q |
312 |
atgaattnnnnnnnnttgcctctattttaatattttgtttaagtggattccttgttctaaaatgctctgaattgtagnnnnnnnnnctttggaataatat |
411 |
Q |
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| T |
15610144 |
atgaattcaaaaaaattgtctctattttgatattttgtttaagtggattccttgttctaaaatgctctgaattgtag-ttttttttctttggaataatat |
15610046 |
T |
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| Q |
412 |
ttaagtttatgattagcttctcattttgaacaattgatgttattattttctataattatagttaaatttcttgatgaatgtggtgcctctt |
502 |
Q |
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| T |
15610045 |
ttaagtttatgattagcttctcattttgaacaattgatgttattattttctataagtatagttaaatttcttgatgaatgtggtgcctctt |
15609955 |
T |
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