View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_low_31 (Length: 255)

Name: NF17125_low_31
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17125_low_31
NF17125_low_31
[»] chr7 (9 HSPs)
chr7 (19-245)||(46524586-46524812)
chr7 (36-245)||(46479107-46479316)
chr7 (36-245)||(46520537-46520746)
chr7 (36-245)||(46490309-46490518)
chr7 (36-245)||(46532156-46532365)
chr7 (36-242)||(46326455-46326661)
chr7 (59-248)||(46494630-46494819)
chr7 (55-248)||(46516915-46517108)
chr7 (36-248)||(46322744-46322956)
[»] chr3 (1 HSPs)
chr3 (36-143)||(7475308-7475415)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 46524586 - 46524812
Alignment:
Q  19 actatgtgaaacgccgagtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctga 118  Q
    |||||||||||  | | |||||| ||||  |||| |||||||||||| || || |||||||| ||||| ||||||||||||||||||| |||||||||||    
T  46524586 actatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagctga 46524685  T
Q  119 gagttacaatctggtggcgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcatttt 218  Q
    ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || || |||||||| ||||| |||||||||||||||||    
T  46524686 gagctacaatctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttctttacctttctcagcaatatgcatttt 46524785  T
Q  219 gatgccattcacttccactgttctgtg 245  Q
    ||| ||||||||||||||| |||||||    
T  46524786 gattccattcacttccactcttctgtg 46524812  T

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Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 245
Target Start/End: Original strand, 46479107 - 46479316
Alignment:
Q  36 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 135  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||  ||||   |||||||||||    
T  46479107 gtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagcagcaatctggtgg 46479206  T
Q  136 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 235  Q
    |||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  46479207 cgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcacttcca 46479306  T
Q  236 ctgttctgtg 245  Q
    | ||||||||    
T  46479307 ccgttctgtg 46479316  T

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Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 245
Target Start/End: Original strand, 46520537 - 46520746
Alignment:
Q  36 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 135  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||  ||||   |||||||||||    
T  46520537 gtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagcagcaatctggtgg 46520636  T
Q  136 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 235  Q
    |||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  46520637 cgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcacttcca 46520736  T
Q  236 ctgttctgtg 245  Q
    | ||||||||    
T  46520737 ccgttctgtg 46520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 36 - 245
Target Start/End: Original strand, 46490309 - 46490518
Alignment:
Q  36 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 135  Q
    |||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||||||||| ||||| | ||||||||  ||||    ||||||||||    
T  46490309 gtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagcaacagcgcggtaaccgagggagccaagagcagaaatctggtgg 46490408  T
Q  136 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 235  Q
    |||||||||||||||||||| || |||||||||||||||| ||| || || |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  46490409 cgccatgaataccagagttcagggaagccatgaaggaacaggacaacgggtccttctttacctttctcagcaatatgcattttgatgccattcacttcca 46490508  T
Q  236 ctgttctgtg 245  Q
    ||||||||||    
T  46490509 ctgttctgtg 46490518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 36 - 245
Target Start/End: Original strand, 46532156 - 46532365
Alignment:
Q  36 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 135  Q
    ||||||||| || ||||  ||||| ||||| || || |||||||| |||||||||||||| || ||||| | ||||||||  |||| |||||| ||||||    
T  46532156 gtagctgcttattgaagatggagcctcggtgtcaccatagccacgcagatctggagcaacggcgcggtaaccgagggagccaagagctacaatttggtgg 46532255  T
Q  136 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 235  Q
    |||||||||||||||||||| || |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  46532256 cgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttcttttcctttttcagcaatatgcattttgattccattcacctcca 46532355  T
Q  236 ctgttctgtg 245  Q
    ||||||||||    
T  46532356 ctgttctgtg 46532365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 36 - 242
Target Start/End: Complemental strand, 46326661 - 46326455
Alignment:
Q  36 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 135  Q
    ||||||||||||||||| |||| |||| || || || |||||||| ||||| ||||||||||||||||| | |||||| | |||||   |||||||||||    
T  46326661 gtagctgctaatggaagacggaacatctgtgtcaccatagccacggagatcgggagcaacagcacggtaaccgagggatccgagagccgcaatctggtgg 46326562  T
Q  136 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 235  Q
    ||||| || ||||||||||| |||||||| ||||||||||| || || || |||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  46326561 cgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattccattcacttcca 46326462  T
Q  236 ctgttct 242  Q
    |||||||    
T  46326461 ctgttct 46326455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 248
Target Start/End: Original strand, 46494630 - 46494819
Alignment:
Q  59 catcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtggcgccatgaataccagagttcggg 158  Q
    |||| |||||||| || ||||| ||||| ||||| ||||| ||||| | ||| |||| |||||   |||||||||||||||| || ||||||||||| ||    
T  46494630 catcagtatcgccataaccacgaagatcgggagccacagcccggtaaccgagagagccgagagccgcaatctggtggcgccaagagtaccagagttcagg 46494729  T
Q  159 aaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttccactgttctgtgctc 248  Q
     || || |||||||||| ||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46494730 gaatccgtgaaggaacaggacaacaggtccttcttttcctttttcagcaatatgcattttgattccattcacttccactgttctgtgctc 46494819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 248
Target Start/End: Original strand, 46516915 - 46517108
Alignment:
Q  55 ggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtggcgccatgaataccagagtt 154  Q
    |||||||| || || ||||||||||  ||||||||||| || |  |||||||  |||||||||||||  |||||||||||||||||||| ||||||| ||    
T  46516915 ggagcatcagtgtcaccgtagccacagagatctggagccacggtgcggtagccaagggagctgagagcaacaatctggtggcgccatgagtaccagattt 46517014  T
Q  155 cgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttccactgttctgtgctc 248  Q
    | ||||| |||||||||||||| || | ||| |||||||||||||| || || | |||||||||||| ||||||||||||||||||||||||||    
T  46517015 caggaaaaccatgaaggaacaatactattggtccttcttttcctttctctgcgacatgcattttgattccattcacttccactgttctgtgctc 46517108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 248
Target Start/End: Complemental strand, 46322956 - 46322744
Alignment:
Q  36 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 135  Q
    ||||||||| || ||||  ||||| || || || || |||||||||||||| ||||| || || ||||||| ||| |||| |||||   |||||||||||    
T  46322956 gtagctgcttattgaagatggagcctcagtgtcaccatagccacgtagatccggagctacggcgcggtagccgagagagccgagagccgcaatctggtgg 46322857  T
Q  136 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 235  Q
    ||||| || ||||||||||| |||||||| ||||||||||| || || || |||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  46322856 cgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattccattcacttcca 46322757  T
Q  236 ctgttctgtgctc 248  Q
    || ||||||||||    
T  46322756 ctcttctgtgctc 46322744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 7475415 - 7475308
Alignment:
Q  36 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 135  Q
    ||||||||| || ||||  |||| |||||| || || |||||||| ||||| | ||| ||  || |||||| |||||||||||||| || ||||||||||    
T  7475415 gtagctgcttattgaagatggagaatcggtgtcaccatagccacggagatcagtagccacgacatggtagccgagggagctgagagctataatctggtgg 7475316  T
Q  136 cgccatga 143  Q
    ||||||||    
T  7475315 cgccatga 7475308  T

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