View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_low_32 (Length: 250)

Name: NF17125_low_32
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17125_low_32
NF17125_low_32
[»] chr8 (6 HSPs)
chr8 (13-250)||(33006069-33006307)
chr8 (122-250)||(3778842-3778970)
chr8 (138-250)||(3706902-3707014)
chr8 (122-250)||(3700205-3700333)
chr8 (138-247)||(3771184-3771293)
chr8 (138-247)||(3718411-3718520)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 33006307 - 33006069
Alignment:
Q  13 aatatatataatttaaatgagcaacttcataaaccataaaccaaatcactgatctatagttagcaattctctctccaattccattc-atggccgaaacaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  33006307 aatatatataatttaaatgagcaacttcataaaccataaaccaaatcactgatctatagttagcaactctctctccaattccattccatggccgaaacaa 33006208  T
Q  112 aaccaactagtcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccactt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33006207 aaccaactagtcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccactt 33006108  T
Q  212 ccaaatcacttgcatcttccccaccattgatgcacctat 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33006107 ccaaatcacttgcatcttccccaccattgatgcacctat 33006069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 3778970 - 3778842
Alignment:
Q  122 tcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcact 221  Q
    ||||||||||||||| ||||| ||| ||||||||||  ||  |||| | |||||||| ||||||||||| |||||  ||||| ||||| | ||  |||||    
T  3778970 tcatatagtagtaacttcaattcctgtgtttagccaccaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcact 3778871  T
Q  222 tgcatcttccccaccattgatgcacctat 250  Q
    |||||||||||||||||||||||||||||    
T  3778870 tgcatcttccccaccattgatgcacctat 3778842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 3706902 - 3707014
Alignment:
Q  138 tcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccacca 237  Q
    ||||||||||| ||||||||| ||  |||| | |||||||| ||||||||||| |||||  ||||| ||||| | ||  |||||||||||||||||||||    
T  3706902 tcaatccctctatttagccatcaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcacttgcatcttccccacca 3707001  T
Q  238 ttgatgcacctat 250  Q
    |||||||||||||    
T  3707002 ttgatgcacctat 3707014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 3700205 - 3700333
Alignment:
Q  122 tcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcact 221  Q
    |||||||| |||||  ||| ||||||| || |||||  |||| ||  |||||||||| |||||||||||||||||  |||||||  || | || ||||||    
T  3700205 tcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctccataaatacattcatatcact 3700304  T
Q  222 tgcatcttccccaccattgatgcacctat 250  Q
    |||||||||||||| ||||||||||||||    
T  3700305 tgcatcttccccactattgatgcacctat 3700333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 3771293 - 3771184
Alignment:
Q  138 tcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccacca 237  Q
    ||||| ||||| ||||||||  ||  |||| | |||||||||||||||||||| |||||  ||||| ||||| | || ||||||||||||||| |||| |    
T  3771293 tcaattcctctatttagccaccaaagttctattattgagttctgcaagagactaattcatctccatcaccacattcatatcacttgcatcttctccacta 3771194  T
Q  238 ttgatgcacc 247  Q
    ||||||||||    
T  3771193 ttgatgcacc 3771184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 3718411 - 3718520
Alignment:
Q  138 tcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccacca 237  Q
    ||||| ||||| ||||||||  ||  |||| | |||||||| ||||||||| | |||||  ||||| ||||| | ||  |||||||||||||||||||||    
T  3718411 tcaattcctctatttagccaccaaagttctattattgagttttgcaagagattaattcatctccatcaccacattcatgtcacttgcatcttccccacca 3718510  T
Q  238 ttgatgcacc 247  Q
    ||||||||||    
T  3718511 ttgatgcacc 3718520  T

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