View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_low_35 (Length: 240)

Name: NF17125_low_35
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17125_low_35
NF17125_low_35
[»] chr5 (19 HSPs)
chr5 (97-224)||(2356922-2357059)
chr5 (10-96)||(3957500-3957586)
chr5 (10-96)||(8813683-8813769)
chr5 (13-96)||(4929509-4929592)
chr5 (10-96)||(5324403-5324489)
chr5 (10-99)||(28075969-28076058)
chr5 (10-80)||(4928887-4928957)
chr5 (10-80)||(26687516-26687586)
chr5 (10-80)||(26957247-26957317)
chr5 (10-88)||(21770002-21770084)
chr5 (10-96)||(33430043-33430128)
chr5 (10-54)||(42408565-42408609)
chr5 (10-52)||(3739663-3739705)
chr5 (13-80)||(3958137-3958204)
chr5 (10-52)||(13738104-13738146)
chr5 (10-77)||(42408011-42408078)
chr5 (10-52)||(3739044-3739086)
chr5 (10-45)||(26688057-26688092)
chr5 (10-45)||(26957788-26957823)
[»] chr4 (46 HSPs)
chr4 (10-96)||(31876788-31876874)
chr4 (10-97)||(20422731-20422818)
chr4 (10-101)||(26424404-26424495)
chr4 (10-96)||(2713843-2713929)
chr4 (10-96)||(12639965-12640051)
chr4 (10-97)||(37567474-37567561)
chr4 (10-97)||(48091095-48091182)
chr4 (10-97)||(52597711-52597798)
chr4 (10-96)||(199226-199312)
chr4 (10-80)||(36945223-36945293)
chr4 (10-79)||(36944627-36944696)
chr4 (10-99)||(55815822-55815911)
chr4 (10-97)||(25370392-25370479)
chr4 (10-80)||(389405-389475)
chr4 (10-80)||(20075541-20075611)
chr4 (10-80)||(25369799-25369869)
chr4 (10-80)||(55816450-55816520)
chr4 (11-80)||(26423775-26423844)
chr4 (11-96)||(33569720-33569805)
chr4 (13-97)||(388752-388836)
chr4 (10-98)||(40847675-40847763)
chr4 (10-96)||(6862647-6862733)
chr4 (10-97)||(32291014-32291101)
chr4 (10-80)||(199015-199085)
chr4 (10-80)||(35427262-35427331)
chr4 (10-80)||(36111217-36111286)
chr4 (19-101)||(47321754-47321836)
chr4 (10-80)||(52597506-52597576)
chr4 (10-67)||(32901880-32901937)
chr4 (10-79)||(32902465-32902534)
chr4 (11-80)||(48090482-48090551)
chr4 (13-80)||(12640589-12640656)
chr4 (13-80)||(48782077-48782144)
chr4 (10-52)||(20076186-20076228)
chr4 (10-52)||(28223607-28223649)
chr4 (10-96)||(29809087-29809173)
chr4 (13-97)||(31842726-31842809)
chr4 (10-97)||(40344502-40344589)
chr4 (13-80)||(40345133-40345200)
chr4 (10-52)||(40848130-40848172)
chr4 (10-63)||(3708806-3708859)
chr4 (13-78)||(31877435-31877500)
chr4 (11-82)||(47328397-47328468)
chr4 (10-54)||(48781524-48781568)
chr4 (22-80)||(20422147-20422205)
chr4 (10-45)||(37566954-37566989)
[»] chr7 (28 HSPs)
chr7 (10-97)||(47813970-47814057)
chr7 (10-100)||(46732563-46732653)
chr7 (13-101)||(19816895-19816983)
chr7 (10-97)||(36682834-36682921)
chr7 (10-91)||(4895082-4895163)
chr7 (10-78)||(30711806-30711874)
chr7 (10-97)||(34853996-34854083)
chr7 (13-80)||(36683467-36683534)
chr7 (10-80)||(4894515-4894585)
chr7 (10-80)||(34853407-34853477)
chr7 (10-80)||(47814635-47814705)
chr7 (10-66)||(33805999-33806055)
chr7 (13-80)||(22276079-22276146)
chr7 (10-101)||(27855561-27855651)
chr7 (13-80)||(42456519-42456586)
chr7 (10-80)||(19816280-19816350)
chr7 (10-80)||(24044043-24044113)
chr7 (10-96)||(42455921-42456007)
chr7 (10-80)||(46814421-46814491)
chr7 (10-80)||(46815062-46815132)
chr7 (10-74)||(32499872-32499936)
chr7 (10-52)||(18520901-18520943)
chr7 (10-52)||(32499293-32499335)
chr7 (10-78)||(22275443-22275510)
chr7 (13-50)||(36620743-36620780)
chr7 (13-97)||(36620117-36620201)
chr7 (13-48)||(46012943-46012978)
chr7 (10-48)||(24323982-24324020)
[»] chr3 (44 HSPs)
chr3 (10-97)||(50687708-50687795)
chr3 (10-96)||(3944895-3944981)
chr3 (10-96)||(23584883-23584969)
chr3 (10-96)||(23599706-23599792)
chr3 (10-96)||(44868007-44868093)
chr3 (10-97)||(31014924-31015011)
chr3 (10-79)||(31014354-31014423)
chr3 (13-96)||(50675128-50675211)
chr3 (10-80)||(24220595-24220665)
chr3 (10-96)||(25025174-25025260)
chr3 (10-80)||(29342357-29342427)
chr3 (10-99)||(37373962-37374051)
chr3 (10-106)||(32672156-32672252)
chr3 (10-80)||(25025764-25025834)
chr3 (10-80)||(44868618-44868688)
chr3 (10-80)||(55281851-55281921)
chr3 (10-79)||(48218608-48218677)
chr3 (10-54)||(29342993-29343037)
chr3 (10-62)||(42356270-42356322)
chr3 (10-98)||(55282421-55282508)
chr3 (10-77)||(8427743-8427810)
chr3 (10-76)||(23584257-23584323)
chr3 (10-76)||(23599080-23599146)
chr3 (10-52)||(37374859-37374901)
chr3 (10-80)||(37375468-37375538)
chr3 (10-52)||(43658895-43658937)
chr3 (10-76)||(47737673-47737739)
chr3 (10-80)||(48219235-48219305)
chr3 (10-78)||(19555288-19555356)
chr3 (10-54)||(38575642-38575686)
chr3 (13-52)||(37374609-37374648)
chr3 (10-52)||(38575065-38575107)
chr3 (10-52)||(41875616-41875658)
chr3 (10-52)||(49752317-49752359)
chr3 (10-71)||(43103924-43103985)
chr3 (10-46)||(19555923-19555959)
chr3 (10-50)||(40887941-40887981)
chr3 (13-52)||(49752913-49752952)
chr3 (10-51)||(32672783-32672824)
chr3 (10-51)||(47737108-47737149)
chr3 (21-80)||(41459146-41459204)
chr3 (10-52)||(24221172-24221214)
chr3 (16-74)||(50687124-50687182)
chr3 (10-43)||(8427269-8427302)
[»] chr2 (36 HSPs)
chr2 (10-96)||(20244171-20244257)
chr2 (10-97)||(4386960-4387047)
chr2 (10-97)||(28223787-28223874)
chr2 (10-96)||(9224266-9224352)
chr2 (10-98)||(7716669-7716757)
chr2 (10-97)||(3595895-3595982)
chr2 (10-80)||(3595262-3595332)
chr2 (10-96)||(16571118-16571204)
chr2 (10-80)||(28224388-28224458)
chr2 (10-88)||(39477325-39477403)
chr2 (10-91)||(8113300-8113381)
chr2 (13-101)||(6849545-6849633)
chr2 (13-80)||(6849304-6849371)
chr2 (10-97)||(30161932-30162019)
chr2 (10-80)||(10883303-10883373)
chr2 (10-80)||(16887599-16887669)
chr2 (13-95)||(16903092-16903174)
chr2 (10-98)||(40165871-40165959)
chr2 (13-96)||(8963504-8963587)
chr2 (10-96)||(7583793-7583879)
chr2 (10-80)||(11256132-11256202)
chr2 (13-83)||(40166846-40166916)
chr2 (10-67)||(467134-467191)
chr2 (10-78)||(11256740-11256808)
chr2 (10-80)||(7583148-7583218)
chr2 (10-80)||(16571726-16571796)
chr2 (10-96)||(33847873-33847959)
chr2 (10-67)||(20243582-20243639)
chr2 (10-80)||(467341-467411)
chr2 (10-80)||(7717285-7717354)
chr2 (10-79)||(17918038-17918107)
chr2 (29-80)||(4386371-4386422)
chr2 (10-77)||(39476534-39476601)
chr2 (22-79)||(8112697-8112754)
chr2 (10-45)||(17918685-17918720)
chr2 (10-97)||(12207385-12207473)
[»] chr8 (33 HSPs)
chr8 (10-102)||(40309500-40309592)
chr8 (13-96)||(44062599-44062682)
chr8 (10-96)||(7818474-7818560)
chr8 (10-96)||(33114188-33114274)
chr8 (10-96)||(35237259-35237345)
chr8 (10-80)||(36848197-36848267)
chr8 (10-77)||(30115386-30115453)
chr8 (10-97)||(39852153-39852240)
chr8 (10-96)||(16889195-16889281)
chr8 (10-98)||(43480614-43480702)
chr8 (10-80)||(11998472-11998542)
chr8 (10-96)||(11999080-11999166)
chr8 (10-80)||(30115996-30116066)
chr8 (10-96)||(43591616-43591702)
chr8 (13-78)||(43481284-43481349)
chr8 (10-79)||(44062002-44062071)
chr8 (10-78)||(38778172-38778240)
chr8 (10-80)||(43591023-43591093)
chr8 (11-80)||(35237865-35237933)
chr8 (13-96)||(4374995-4375078)
chr8 (10-77)||(16889828-16889895)
chr8 (10-52)||(4374301-4374343)
chr8 (10-52)||(16879932-16879974)
chr8 (10-80)||(16880518-16880588)
chr8 (10-80)||(33113591-33113661)
chr8 (10-80)||(40907615-40907684)
chr8 (10-79)||(39852803-39852872)
chr8 (10-52)||(7819097-7819139)
chr8 (10-52)||(10805992-10806034)
chr8 (10-91)||(10806437-10806518)
chr8 (10-52)||(2209050-2209092)
chr8 (10-52)||(4373730-4373772)
chr8 (13-52)||(38778798-38778837)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-97)||(11265-11351)
[»] scaffold0229 (1 HSPs)
scaffold0229 (10-100)||(15233-15323)
[»] chr6 (14 HSPs)
chr6 (10-80)||(5523216-5523286)
chr6 (10-96)||(5523846-5523932)
chr6 (10-97)||(33668220-33668307)
chr6 (10-80)||(6032174-6032244)
chr6 (10-80)||(30610727-30610797)
chr6 (10-97)||(6032753-6032840)
chr6 (10-97)||(30611345-30611432)
chr6 (10-80)||(12809085-12809155)
chr6 (10-96)||(13936640-13936726)
chr6 (10-96)||(31723833-31723919)
chr6 (10-91)||(12809702-12809783)
chr6 (13-80)||(33668833-33668900)
chr6 (10-88)||(13944298-13944376)
chr6 (10-91)||(33648163-33648244)
[»] chr1 (32 HSPs)
chr1 (10-100)||(1403036-1403126)
chr1 (12-91)||(27817006-27817085)
chr1 (10-97)||(49534396-49534483)
chr1 (10-96)||(6288204-6288290)
chr1 (10-96)||(8560156-8560242)
chr1 (10-80)||(43368835-43368905)
chr1 (10-97)||(27797736-27797823)
chr1 (10-88)||(1403688-1403765)
chr1 (10-80)||(8560743-8560812)
chr1 (10-80)||(42839548-42839618)
chr1 (10-88)||(49533751-49533829)
chr1 (10-80)||(51248483-51248553)
chr1 (10-97)||(42838936-42839023)
chr1 (10-88)||(41563187-41563265)
chr1 (10-80)||(52859788-52859858)
chr1 (10-78)||(27797135-27797203)
chr1 (13-80)||(42840316-42840383)
chr1 (10-80)||(7219648-7219717)
chr1 (10-80)||(42839717-42839787)
chr1 (10-80)||(43368206-43368276)
chr1 (10-52)||(48843962-48844004)
chr1 (10-74)||(27934295-27934358)
chr1 (10-54)||(37725421-37725465)
chr1 (10-66)||(48369512-48369568)
chr1 (10-80)||(48843596-48843666)
chr1 (10-96)||(7782691-7782777)
chr1 (10-51)||(41563792-41563833)
chr1 (10-54)||(51247870-51247914)
chr1 (10-44)||(6287672-6287706)
chr1 (10-52)||(7219052-7219094)
chr1 (12-48)||(37725672-37725708)
chr1 (10-52)||(52859193-52859235)
[»] scaffold1095 (1 HSPs)
scaffold1095 (10-61)||(1520-1571)
[»] scaffold0368 (1 HSPs)
scaffold0368 (10-97)||(11784-11871)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 2356922 - 2357059
Alignment:
Q  97 ttaaactgatggcatgatatttttatctttaaataaaaaagtgcacaacggtaaaacaaaagttgcacacttgttaacttagactttaatgt-------- 188  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||| |||||||||||||||||||||||| ||||||||||            
T  2356922 ttaaactgatggcatgatatttttatctctaaataaaaaaatgcacaccggtgaaaaaaaagttgcacacttgttaacttaaactttaatgtttctcgat 2357021  T
Q  189 --gtccaagttagcaacaacaaaaacaagtaaaagact 224  Q
      ||||||||||||||||||||||||||||||||||||    
T  2357022 tggtccaagttagcaacaacaaaaacaagtaaaagact 2357059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 3957586 - 3957500
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  3957586 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 3957500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 8813683 - 8813769
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||| |||||||| |||||||||||| |||||||||| ||||    
T  8813683 aagaatatgttctttacttaatctaatcattgaatccaactttcccatgatggaaaaggattaacctttcccatatgaaatgccacc 8813769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 4929509 - 4929592
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| || ||||||| ||||    
T  4929509 aatatattcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacc 4929592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 5324403 - 5324489
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||   ||||||||||||||||| || ||||||||||||    
T  5324403 aagaatatgttcttcacttaatctaatcattgaatccaactttctcatggtatgaaagaattaacctttcccatgtgaaatgtcacc 5324489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 28075969 - 28076058
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacctta 99  Q
    |||||||| || ||||||||||||||||||||||||||||||| | |||||||||||  |||||||||| | || |||||||||||||||    
T  28075969 aagaatatatttttcacttaatctaatcattgaatccaactttcccatggtggaaaatgattaaccttttccatgtgaaatgtcacctta 28076058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 4928957 - 4928887
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||| |||||    
T  4928957 aagaatatgttcttcacttaatctaatcattaaatccaacttttctatggtgggaaaggattaacttttcc 4928887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 26687586 - 26687516
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||| ||||||||||||    
T  26687586 aagaatatgttcttcacttaatctaatcattgaatctaactttcccatggtagaaaaggattaacctttcc 26687516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 26957317 - 26957247
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||| ||||||||||||    
T  26957317 aagaatatgttcttcacttaatctaatcattgaatctaactttcccatggtagaaaaggattaacctttcc 26957247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 21770084 - 21770002
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatc----caacttttcaatggtggaaaagaattaacctttcctatatgaa 88  Q
    ||||||||||||||||||||||||||||||||||||    ||||||| | |||||||||||| |||||||||||| |||||||    
T  21770084 aagaatatgttcttcacttaatctaatcattgaatccaaccaactttcccatggtggaaaaggattaacctttcccatatgaa 21770002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 33430128 - 33430043
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||| |||||||||| | || ||||||| ||||    
T  33430128 aagaatatgttcttcacttaatctaatcattgaatccaac-tttccatggtaggaaaggattaaccttttccatgtgaaatgccacc 33430043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 42408565 - 42408609
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttc 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42408565 aagaatatgttcttcacttaatctaatcattgaatccaacttttc 42408609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 3739663 - 3739705
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3739663 aagaatatgttcttcacttaatctaatcattgaatccaacttt 3739705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 3958137 - 3958204
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||| |||||||| |||||| || || ||| |||| ||||||||||||    
T  3958137 aatatgttcttcacttaatctaattattgaatcaaactttccattgatgggaaaggattaacctttcc 3958204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 13738146 - 13738104
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  13738146 aagaatatgttcttcacttaatccaatcattgaatccaacttt 13738104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 42408078 - 42408011
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctt 77  Q
    |||||||||||||||| |||||||||||||||||||||| ||| | || |||| |||  |||||||||    
T  42408078 aagaatatgttcttcatttaatctaatcattgaatccaattttcccatagtgggaaaagattaacctt 42408011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 3739086 - 3739044
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  3739086 aagaatatatttttcacttaatctaatcattgaatccaacttt 3739044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 26688057 - 26688092
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatc 45  Q
    |||||||||||||||||||||| |||||||||||||    
T  26688057 aagaatatgttcttcacttaatataatcattgaatc 26688092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 26957788 - 26957823
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatc 45  Q
    |||||||||||||||||||||| |||||||||||||    
T  26957788 aagaatatgttcttcacttaatataatcattgaatc 26957823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 31876874 - 31876788
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||||| ||||    
T  31876874 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaggattaacctttcccatgtgaaatgccacc 31876788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 20422731 - 20422818
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| || ||||||| |||||    
T  20422731 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaggattaagctttcccatgtgaaatgccacct 20422818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 26424404 - 26424495
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| || ||||||| ||| |||||    
T  26424404 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaagaactaacctttcccatgtgaaatgccactttaaa 26424495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 2713843 - 2713929
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||||| ||||    
T  2713843 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacc 2713929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 12640051 - 12639965
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| || ||||||| ||||    
T  12640051 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacc 12639965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 37567474 - 37567561
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||| || ||||||| |||||    
T  37567474 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtggaaaagtattaacctttcccatgtgaaatgacacct 37567561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 48091095 - 48091182
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||  |||||||||||| |||||||||| |||||    
T  48091095 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatatgaaatgccacct 48091182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 52597711 - 52597798
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||||| || ||||||| |||||    
T  52597711 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtgaaaaaggattaacctttcccatgtgaaatgccacct 52597798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 199226 - 199312
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  199226 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 199312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 36945223 - 36945293
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  36945223 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcc 36945293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 36944696 - 36944627
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttc 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  36944696 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaagattaacctttc 36944627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 55815911 - 55815822
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacctta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| | || |||| |||| |||||||||||| || ||||||| |||||||    
T  55815911 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatagtgggaaaggattaacctttcccatgtgaaatgccacctta 55815822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 25370392 - 25370479
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || | ||||| |||||    
T  25370392 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtaaaatgccacct 25370479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 389405 - 389475
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||||||||||    
T  389405 aagaatatgttcttcacttaatctaatcactgaatccaacttttccatggtgggaaaggattaacctttcc 389475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 20075611 - 20075541
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  20075611 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcc 20075541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 25369869 - 25369799
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||||||||||||    
T  25369869 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatagtggaaaaggattaacctttcc 25369799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 55816450 - 55816520
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  55816450 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcc 55816520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 26423844 - 26423775
Alignment:
Q  11 agaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  26423844 agaatatgttcttcacttaatctaatcattgaatccaactttttcatggtgggaaaggattaacctttcc 26423775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 33569805 - 33569720
Alignment:
Q  11 agaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| ||| |||||||| || ||||||| ||||    
T  33569805 agaatatgttcttcacttaatctaattattgaatccaacttttccatggtgggaaaggattgacctttcccatgtgaaatgccacc 33569720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 388836 - 388752
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| |||||    
T  388836 aatatgtttttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacct 388752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 40847763 - 40847675
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacctt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||| |||| |||||||||| | || ||||||| ||||||    
T  40847763 aagaatatgttcttcacttaatctaatcattgaatccaactttctcatggtgggaaaggattaaccttttccatgtgaaatgccacctt 40847675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 6862733 - 6862647
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||||| |||||  ||| ||||||||||| ||||||| ||||    
T  6862733 aagaatatgttcttcacttaatctaatctttgaatccaactttcctatggtagaaaaagattgacctttcctatgtgaaatgccacc 6862647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 32291101 - 32291014
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| | | |||  |||||||||||| || ||||||| |||||    
T  32291101 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatgattggaaatgattaacctttcccatgtgaaatgccacct 32291014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 199085 - 199015
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||  |||||| | ||||||| |||| ||||||||||||    
T  199085 aagaatatgttcttcacttaatctaatcattgaatttaactttcccatggtgggaaaggattaacctttcc 199015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 35427331 - 35427262
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||| ||||||||||||    
T  35427331 aagaatatgttcttcacttaatctaatcattgaatccaa-tttcccatggcggaaaaggattaacctttcc 35427262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 36111217 - 36111286
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||| ||||||||||||    
T  36111217 aagaatatgttcttcacttaatctaatcattgaatccaa-tttcccatggtgggaaaggattaacctttcc 36111286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 47321836 - 47321754
Alignment:
Q  19 ttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaaa 101  Q
    |||||||||||||||||||||| ||||||||||||| || |||  |||| |||||||||||| |||||||||| |||| ||||    
T  47321836 ttcttcacttaatctaatcattaaatccaacttttccatagtgataaaggattaacctttcccatatgaaatgccaccgtaaa 47321754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 52597576 - 52597506
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||  ||||||||||||    
T  52597576 aagaatatgttcttcacttaatctaatcattgaatctaactttcccatggtgggaaaagattaacctttcc 52597506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 32901937 - 32901880
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaag 67  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||    
T  32901937 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtggaaaag 32901880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 32902465 - 32902534
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttc 79  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||  |||||||||||    
T  32902465 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaatattaacctttc 32902534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 48090551 - 48090482
Alignment:
Q  11 agaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||| ||||||||||||||||||||||||||||| | ||||||| || | ||||||||||||    
T  48090551 agaatatgttctacacttaatctaatcattgaatccaactttcccatggtgggaatggattaacctttcc 48090482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 12640589 - 12640656
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||| ||||||||||||||||||||||||||| | ||||||| |||| ||||| ||||||    
T  12640589 aatatgttcttcgcttaatctaatcattgaatccaactttcccatggtgggaaaggattaagctttcc 12640656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 48782077 - 48782144
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||  |||  ||||||||||||    
T  48782077 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgcgaaatgattaacctttcc 48782144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 20076186 - 20076228
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  20076186 aagaatatgttcttcacttaatctaatcattgaatccaacttt 20076228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 28223649 - 28223607
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28223649 aagaatatgttcttcacttaatctaatcattgaatccaacttt 28223607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 29809087 - 29809173
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||| |   |||  |||||||||||| |||||||||| ||||    
T  29809087 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatgataagaaatgattaacctttcccatatgaaatgccacc 29809173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 31842726 - 31842809
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||| | |||  ||||||||||| ||| | |||||||||||    
T  31842726 aatatgttcttcacttaatctaatcattgaatcc-actttcccatggttggaaatgattaacctttcatatgtaaaatgtcacct 31842809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 40344589 - 40344502
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||| ||| |||||||||||   ||| ||  |||| ||||| |||||| ||||||||| ||||||    
T  40344589 aagaatatgttcttcacttaatctaataatttaatccaactttctcatgatgagaaaggattaaactttcccatatgaaatatcacct 40344502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 40345133 - 40345200
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||| |||||| | || |||| |||  ||||||||||||    
T  40345133 aatatgttcttcacttaatctaatcattgaatctaactttcccattgtgggaaaagattaacctttcc 40345200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 40848130 - 40848172
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  40848130 aagaatatgttcttcacttaatctaatcattgaatcaaacttt 40848172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 3708859 - 3708806
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtgga 63  Q
    |||| ||||||||| |||||||||||||||||||||||||||| | ||||||||    
T  3708859 aagagtatgttctttacttaatctaatcattgaatccaactttcccatggtgga 3708806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 31877435 - 31877500
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaaccttt 78  Q
    |||||||||||||||||||||||||||| ||||||||||| | || ||| ||||| ||||| ||||    
T  31877435 aatatgttcttcacttaatctaatcattaaatccaactttcccatagtgaaaaaggattaaacttt 31877500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 47328397 - 47328468
Alignment:
Q  11 agaatatgttcttcacttaatctaatcattgaatccaacttttcaatggt-ggaaaagaattaacctttccta 82  Q
    |||||||||||||||||||||||||| |||||||| |||||||| || || |||||||| | |||||||||||    
T  47328397 agaatatgttcttcacttaatctaattattgaatctaacttttccatagtaggaaaaga-tgaacctttccta 47328468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 48781568 - 48781524
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttc 54  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  48781568 aagaatatattcatcacttaatctaatcattgaatccaacttttc 48781524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 20422205 - 20422147
Alignment:
Q  22 ttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||| | |||| | ||||||| |||| ||||||||||||    
T  20422205 ttcacttaatctaatcattgaatctacctttcccatggtgggaaaggattaacctttcc 20422147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 37566989 - 37566954
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatc 45  Q
    |||||||||||||||||||||| |||||||||||||    
T  37566989 aagaatatgttcttcacttaatttaatcattgaatc 37566954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 47814057 - 47813970
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| | |||||||| |||||    
T  47814057 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccacatgaaatgccacct 47813970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 46732653 - 46732563
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| || ||||||| ||||||||    
T  46732653 aagaatatgttattcacttaatctaatcattgaatccaacttttccatagtgggaaagaattaacctttcccatgtgaaatgccaccttaa 46732563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 19816895 - 19816983
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaaa 101  Q
    |||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||||| |||||||||| | |||||||    
T  19816895 aatatgttcttcacttaatctaatcatttaatccaactttcccatggtggaaaaggattaacctttcccatatgaaatgccgccttaaa 19816983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 36682921 - 36682834
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||  |||||||||||| || ||||||| |||||    
T  36682921 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacct 36682834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 4895082 - 4895163
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatg 91  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||  |||||||||||| || |||||||    
T  4895082 aagaatatgttcttcacttaatctaataattgaatccaactttcccatggtggaaaatgattaacctttcccatgtgaaatg 4895163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 30711874 - 30711806
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaaccttt 78  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||    
T  30711874 aagaatatgttcttcacttaatctaataattgaatccaacttttccatggtgggaaaaaattaaccttt 30711806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 34853996 - 34854083
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||| || |||||| | ||||||| |||| |||||||||||| || ||||||| |||||    
T  34853996 aagaatatgttcttcacttaatctaatcattgactctaactttcctatggtgggaaaggattaacctttcccatgtgaaatggcacct 34854083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 36683467 - 36683534
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  36683467 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcc 36683534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 4894585 - 4894515
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||| ||||||||||||    
T  4894585 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaggattaacctttcc 4894515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 34853477 - 34853407
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||| ||||||||||||    
T  34853477 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaggattaacctttcc 34853407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 47814635 - 47814705
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||| ||||||    
T  47814635 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaagctttcc 47814705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 33806055 - 33805999
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaa 66  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  33806055 aagaatatgttcttcacttaatttaatcattgaatccaacttttccatggtggaaaa 33805999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 22276079 - 22276146
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||| |||||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  22276079 aatatgttcttcatttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcc 22276146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 27855651 - 27855561
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaaa 101  Q
    ||||||||||||||||||||||||||||||||||| |||||||   ||||||| |||  |||||||||||| || ||||||| |||||||||    
T  27855651 aagaatatgttcttcacttaatctaatcattgaat-caactttctcatggtgggaaatgattaacctttcccatgtgaaatgccaccttaaa 27855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 42456519 - 42456586
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  42456519 aatatgttcttcacttaatgtaatcattgaatccaactttcccatggtgggaaaggattaacctttcc 42456586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 19816350 - 19816280
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||| | ||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  19816350 aagaatatgttttacacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcc 19816280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 24044043 - 24044113
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||  |||||| | ||||||| |||| ||||||||||||    
T  24044043 aagaatatgttcttcacttaatctaatcattgaataaaactttcccatggtgggaaaggattaacctttcc 24044113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 42456007 - 42455921
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||| |||||||||||||||| ||| |  |||||| |||| |||||||||||| || ||||||| ||||    
T  42456007 aagaatatgttcttcacttaatttaatcattgaatccaattttcccgtggtgggaaaggattaacctttcccatgtgaaatgccacc 42455921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 46814491 - 46814421
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||| |||||| ||||||| | ||||||| |||| ||||||||||||    
T  46814491 aagaatatgttcttcacttaatctaatcgttgaattcaactttcccatggtgggaaaggattaacctttcc 46814421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 46815062 - 46815132
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||| ||||||| |||||    
T  46815062 aagaatatgttcttcatttaatctaatcattgaatccaactttcccatggtgggaaataattaacttttcc 46815132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 32499872 - 32499936
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaac 74  Q
    ||||||||||||||||||||||||||||||||||||||||||| |  | |||| |||||||||||    
T  32499872 aagaatatgttcttcacttaatctaatcattgaatccaactttcccgttgtgggaaagaattaac 32499936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 18520943 - 18520901
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18520943 aagaatatgttcttcacttaatctaatcattgaatccaacttt 18520901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 32499335 - 32499293
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32499335 aagaatatgttcttcacttaatctaatcattgaatccaacttt 32499293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 22275510 - 22275443
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaaccttt 78  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||  ||||||||||    
T  22275510 aagaatatgttcttcacttaatctaatcattgaat-caactttcccatggtgggaaatgattaaccttt 22275443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 36620743 - 36620780
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaact 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36620743 aatatgttcttcacttaatctaatcattgaatccaact 36620780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 36620201 - 36620117
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||| |||||||||| |||||||||||| |||||||   ||| | |||||  |||||||||||| |||||||||| |||||    
T  36620201 aatatgtttttcacttaatttaatcattgaattcaactttctcatgatagaaaaagattaacctttcccatatgaaatgccacct 36620117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 46012943 - 46012978
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaa 48  Q
    ||||||||||||||||||||||||||||||||||||    
T  46012943 aatatgttcttcacttaatctaatcattgaatccaa 46012978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 24323982 - 24324020
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaa 48  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  24323982 aagaatatgttcttcacttaatctaattattgaatccaa 24324020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 50687708 - 50687795
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||| || |||||||||||||    
T  50687708 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatggtgggaaagaattaacctttcccatgtgaaatgtcacct 50687795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 3944981 - 3944895
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  3944981 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 3944895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 23584883 - 23584969
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  23584883 aagaatatgttcttcacttaatctaatcattgaatccaactttaccatggtgggaaaggattaacctttcccatgtgaaatgccacc 23584969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 23599706 - 23599792
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  23599706 aagaatatgttcttcacttaatctaatcattgaatccaactttaccatggtgggaaaggattaacctttcccatgtgaaatgccacc 23599792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 44868093 - 44868007
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||  ||||||||||||||| ||||||| ||||    
T  44868093 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtggaaaatgattaacctttcctatgtgaaatgccacc 44868007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 31014924 - 31015011
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||  |||||||||||| |||||||||| |||||    
T  31014924 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatgatgggaaaagattaacctttcccatatgaaatgccacct 31015011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 31014423 - 31014354
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttc 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||    
T  31014423 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaatctttc 31014354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 50675128 - 50675211
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||||||||| ||||||| | || ||| ||||| |||||||||||| || ||||||||||||    
T  50675128 aatatgttcttcacttaatctaatcattgaattcaactttcccattgtgaaaaaggattaacctttcccatgtgaaatgtcacc 50675211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 24220665 - 24220595
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||||||||    
T  24220665 aagaatatgttcttcacttaatctgatcattgaatccaatttttccatggtaggaaagaattaacctttcc 24220595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 25025260 - 25025174
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||| ||| |||| |||||||||||| || ||||||| ||||    
T  25025260 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatgatgggaaaggattaacctttcccatgtgaaatgccacc 25025174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 29342427 - 29342357
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||  ||||||||||||    
T  29342427 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaagattaacctttcc 29342357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 37374051 - 37373962
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacctta 99  Q
    |||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||  |||||||||||| || | ||||| |||||||    
T  37374051 aagaatatgttcttcacttaatttaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatgtaaaatgccacctta 37373962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 32672252 - 32672156
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaaactgat 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| |||| |||||||||||| || | ||||| ||||| ||| ||||    
T  32672252 aagaatatgttcttcacttaatctaatcattaaatccaactttcccatgttgggaaaggattaacctttcccatgtaaaatgccacctaaaaatgat 32672156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 25025764 - 25025834
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||| |||||||||||||||||||| |||||| | ||||||| |||| ||||||||||||    
T  25025764 aagaatatgttcttctcttaatctaatcattgaatcaaactttcccatggtgggaaaggattaacctttcc 25025834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 44868618 - 44868688
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||| || ||| | ||||||| |||| ||||||||||||    
T  44868618 aagaatatgttcttcacttaatctaatcattgaatcaaattttcccatggtgggaaaggattaacctttcc 44868688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 55281921 - 55281851
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| | ||||||| |||| ||||||||||||    
T  55281921 aagaatatgttcttcacttaatctaatcattaaatccaattttcccatggtgggaaaggattaacctttcc 55281851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 48218677 - 48218608
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttc 79  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| || |||| |||  |||||||||||    
T  48218677 aagaatatgttattcacttaatctaatcattgaatccaacttttccatagtgggaaaagattaacctttc 48218608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 29342993 - 29343037
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttc 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29342993 aagaatatgttcttcacttaatctaatcattgaatccaacttttc 29343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 42356322 - 42356270
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtgg 62  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  42356322 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgg 42356270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 55282421 - 55282508
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacctt 98  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||| ||||| | |||| || ||||||| ||||||    
T  55282421 aagaatatgttcttcacttaatctaatcattaaatccaactttcccatggtgggaaaggattaaac-ttcccatgtgaaatgccacctt 55282508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 8427743 - 8427810
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctt 77  Q
    ||||||||||||||||||||||||||||||| |||| |||||| | ||||||| |||| |||||||||    
T  8427743 aagaatatgttcttcacttaatctaatcattaaatctaactttcccatggtgggaaaggattaacctt 8427810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 23584323 - 23584257
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacct 76  Q
    ||||||||||| |||||||||||||||||||||||| |||||| | ||||||| |||| ||||||||    
T  23584323 aagaatatgtttttcacttaatctaatcattgaatcgaactttcccatggtgggaaaggattaacct 23584257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 23599146 - 23599080
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacct 76  Q
    ||||||||||| |||||||||||||||||||||||| |||||| | ||||||| |||| ||||||||    
T  23599146 aagaatatgtttttcacttaatctaatcattgaatcgaactttcccatggtgggaaaggattaacct 23599080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 37374901 - 37374859
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37374901 aagaatatgttcttcacttaatctaatcattgaatccaacttt 37374859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 37375468 - 37375538
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||| |||||||||||||||||||||||| ||||||||||||   ||||||| |||| ||||||||||||    
T  37375468 aagaagatgttcttcacttaatctaatcatcgaatccaactttcttatggtgggaaaggattaacctttcc 37375538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 43658895 - 43658937
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43658895 aagaatatgttcttcacttaatctaatcattgaatccaacttt 43658937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 47737673 - 47737739
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacct 76  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||||| |||  ||||||||    
T  47737673 aagaatatgttcttcacttaatctaatcattgaatccaacattcccatggtgggaaatgattaacct 47737739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 48219235 - 48219305
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||| ||| |||||||||||||||||||||||||| ||| | ||||||  |||||||||||||||||    
T  48219235 aagaatatattcatcacttaatctaatcattgaatccaattttcccatggtgagaaagaattaacctttcc 48219305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 19555356 - 19555288
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaaccttt 78  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| |||  ||||||||||    
T  19555356 aagaatatgttcttcacttaatctaatcatttaatccaactttcccatgatgggaaaagattaaccttt 19555288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 38575642 - 38575686
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttc 54  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  38575642 aagaatatgttcttcacttaatttaatcattgaatccaacttttc 38575686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 37374609 - 37374648
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37374609 aatatgttcttcacttaatctaatcattgaatccaacttt 37374648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 38575107 - 38575065
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  38575107 aagaatatgttcttcatttaatctaatcattgaatccaacttt 38575065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 41875616 - 41875658
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  41875616 aagaatatgttcttcacttaatctaatcattgaacccaacttt 41875658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 49752359 - 49752317
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  49752359 aagaatatgttcttcacttaatctaatcattgaatcctacttt 49752317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 43103985 - 43103924
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaatt 71  Q
    ||||||||||| ||||||||||| |||| |||||||||||||| | ||||||| ||||||||    
T  43103985 aagaatatgttattcacttaatccaatcgttgaatccaactttcctatggtgggaaagaatt 43103924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 19555923 - 19555959
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatcc 46  Q
    |||||||||||||||||||||||||||||||||||||    
T  19555923 aagaatatgttcttcacttaatctaatcattgaatcc 19555959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 40887941 - 40887981
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaact 50  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  40887941 aagaatatgttcttcacttaatctaatcattgaatacaact 40887981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 49752913 - 49752952
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  49752913 aatatattcttcacttaatctaatcattgaatccaacttt 49752952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 32672783 - 32672824
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaactt 51  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  32672783 aagaatatgttcttcgcttaatctaatcattaaatccaactt 32672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 47737149 - 47737108
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaactt 51  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  47737149 aagaatatgttctccacttaatctaatcgttgaatccaactt 47737108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 41459204 - 41459146
Alignment:
Q  21 cttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||| |||||||   ||||||| |||| ||||||||||||    
T  41459204 cttcacttaatctaatcattgaat-caactttctcatggtgggaaaggattaacctttcc 41459146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 24221172 - 24221214
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||| ||||||||||||||| |||||||| |||||||||||    
T  24221172 aagaatgtgttcttcacttaatataatcattaaatccaacttt 24221214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 50687182 - 50687124
Alignment:
Q  16 atgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaac 74  Q
    ||||| ||||||||||||||| |||||||||||||||   || ||||||||| ||||||    
T  50687182 atgttattcacttaatctaattattgaatccaactttctcatagtggaaaagtattaac 50687124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 8427302 - 8427269
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaa 43  Q
    |||||||||||||||| |||||||||||||||||    
T  8427302 aagaatatgttcttcatttaatctaatcattgaa 8427269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 20244171 - 20244257
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||||| ||||    
T  20244171 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacc 20244257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 4386960 - 4387047
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| |||||    
T  4386960 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacct 4387047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 28223874 - 28223787
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| |||||    
T  28223874 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtgggaaaggattaacctttcccatgtgaaatgccacct 28223787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 9224352 - 9224266
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  9224352 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 9224266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 7716757 - 7716669
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacctt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||| ||||| || ||||||| ||||||    
T  7716757 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacatttcccatgtgaaatgccacctt 7716669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 3595895 - 3595982
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||| || ||||| |||||| ||||| || |||||||||||||    
T  3595895 aagaatatgtttttcacttaatctaatcattgaatccaacttttccatgatgaaaaaggattaacatttcccatgtgaaatgtcacct 3595982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 3595332 - 3595262
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  3595332 aagaatatgttcttcactttatctaatcattgaatccaactttcccatggtgggaaagaattaacctttcc 3595262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 16571204 - 16571118
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  16571204 aagaatatgtttttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatggcacc 16571118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 28224388 - 28224458
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  28224388 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcc 28224458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 39477325 - 39477403
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaa 88  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||  |||||||||||| |||||||    
T  39477325 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatatgaa 39477403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 8113300 - 8113381
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatg 91  Q
    ||||||||||||||||| |||||||||||| |||||||||||| | |||||||||||| |||||||||||| || |||||||    
T  8113300 aagaatatgttcttcacataatctaatcatcgaatccaactttcccatggtggaaaaggattaacctttcccatgtgaaatg 8113381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 6849545 - 6849633
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||| | || | ||||| |||||||||    
T  6849545 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttttccatgtaaaatgccaccttaaa 6849633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 6849371 - 6849304
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  6849371 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcc 6849304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 30162019 - 30161932
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||| ||||| |  ||||||| |||||    
T  30162019 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatgatgggaaaggattaacttttcccacgtgaaatgccacct 30161932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 10883373 - 10883303
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  10883373 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcc 10883303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 16887669 - 16887599
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||| ||||||||||||    
T  16887669 aagaatatgttcttcacttaatctaatcattgaatccaactatcccatggtgggaaaggattaacctttcc 16887599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 16903092 - 16903174
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcac 95  Q
    |||||||| |||||||||||||||||||||||||||||||   |||||||||||| |||||||||||| || | |||||||||    
T  16903092 aatatgttattcacttaatctaatcattgaatccaactttctcatggtggaaaaggattaacctttcccatgtaaaatgtcac 16903174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 40165959 - 40165871
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacctt 98  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||  |||   |||||| || ||||||||||||||    
T  40165959 aagaatatgttcttcacttaatccaatcattgaatccaactttcccatggtggaaaatgattggtctttcccatgtgaaatgtcacctt 40165871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 8963587 - 8963504
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||| | |||||| |||||||||||| || ||||||| ||||    
T  8963587 aatatgtttttcacttaatctaatcattgaatccaactttcccatgatagaaaaggattaacctttcccatgtgaaatgccacc 8963504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 7583793 - 7583879
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||| ||||||||||||||||||||| | || |||| |||  |||||||||||| || ||||||| ||||    
T  7583793 aagaatatgttcttcacttaagctaatcattgaatccaactttcccatagtgggaaaagattaacctttcccatgtgaaatgccacc 7583879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 11256202 - 11256132
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||  |||  ||||||||||||    
T  11256202 aagaatatgttcttcacttaatctaatcattgaatccaactttaccatggtgagaaatgattaacctttcc 11256132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 40166846 - 40166916
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctat 83  Q
    ||||||||||| |||||||||||||||||||||||| ||| | ||||||| |||| |||||||||||||||    
T  40166846 aatatgttcttgacttaatctaatcattgaatccaattttcccatggtgggaaaggattaacctttcctat 40166916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 467191 - 467134
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaag 67  Q
    |||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  467191 aagaatatgttcttcacttaatttaatcattgaatccaactttcccatggtggaaaag 467134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 11256740 - 11256808
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaaccttt 78  Q
    |||||||| ||||||||||||||||||||||||||||||||||   |||||||||||  ||||||||||    
T  11256740 aagaatatattcttcacttaatctaatcattgaatccaactttctcatggtggaaaatgattaaccttt 11256808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 7583218 - 7583148
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||| ||||||||||||||||||||| |||   ||||||| |||| ||||||||||||    
T  7583218 aagaatatgttcttcacctaatctaatcattgaatccaattttctcatggtgggaaaggattaacctttcc 7583148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 16571726 - 16571796
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| | ||| ||| |||| ||||||||||||    
T  16571726 aagaatatgttcttcacttgatctaatcattgaatccaattttcccatgatgggaaaggattaacctttcc 16571796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 33847959 - 33847873
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||||  ||||||||| |||| | |||||||||||| |||  ||||||| || ||||||| ||||    
T  33847959 aagaatatgttcttcacttaatctaattgttgaatccatctttcccatggtggaaaaggattggcctttcccatgtgaaatgccacc 33847873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 20243639 - 20243582
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaag 67  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||||||| ||||    
T  20243639 aagaatatattcttcacttaatctaatcattgaatccaactttcccatggtgggaaag 20243582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 467341 - 467411
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||  | |||||||||  ||||||||||||    
T  467341 aagaatatgttcttcacttaatttaattattgaattcaactttttcacggtggaaaatgattaacctttcc 467411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 7717285 - 7717354
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | ||||||  |||| ||||||||||||    
T  7717285 aagaatatgttcttcacttaatataatcattgaat-caactttcccatggtgagaaaggattaacctttcc 7717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 17918107 - 17918038
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttc 79  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| ||   | ||||| |||||||||||    
T  17918107 aagaatatattcttcacttaatctaatcattgaatctaacttttccataaagaaaaaggattaacctttc 17918038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 4386422 - 4386371
Alignment:
Q  29 aatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  4386422 aatctaatcattgaatccaactttcctatggtgggaaagtattaacctttcc 4386371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 39476601 - 39476534
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctt 77  Q
    |||||||| ||||||||||||||||||||||||||  |||||| | || |||| |||| |||||||||    
T  39476601 aagaatatattcttcacttaatctaatcattgaattaaactttcccatagtgggaaaggattaacctt 39476534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 8112754 - 8112697
Alignment:
Q  22 ttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttc 79  Q
    ||||||||||||||||||||||||||||||| | ||||||  |||| |||||| ||||    
T  8112754 ttcacttaatctaatcattgaatccaactttcccatggtgagaaaggattaacatttc 8112697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 17918685 - 17918720
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatc 45  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17918685 aagaatatgttcttcacttaatctaataattgaatc 17918720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 12207385 - 12207473
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaa-tggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||| |||||||||| |||||| ||||||| ||| |||||||||   |||||||||||  || || ||||| |||||||||| |||||    
T  12207385 aagaacatgttcttcatttaatccaatcattaaattcaacttttcccgtggtggaaaagggttgacttttcccatatgaaatgccacct 12207473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 40309500 - 40309592
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaaac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||  |||||||||| |||| ||||||||||||| ||||    
T  40309500 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtgggaaatgattaaccttttctatgtgaaatgtcacctgaaac 40309592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 44062599 - 44062682
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||| |||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||    
T  44062599 aatatattctccacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcctatatgaaatgccacc 44062682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 7818560 - 7818474
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  7818560 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 7818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 33114188 - 33114274
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  33114188 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 33114274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 35237345 - 35237259
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| || ||||||||||||    
T  35237345 aagaatatgttattcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgtcacc 35237259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 36848197 - 36848267
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  36848197 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaggattaagctttcc 36848267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 30115453 - 30115386
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  30115453 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctt 30115386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 39852240 - 39852153
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||| |||||||||||| || ||||||| |||||    
T  39852240 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatggtgggaaaggattaacctttcccatttgaaatgccacct 39852153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 16889281 - 16889195
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||  |||||||||||| || ||||||| ||||    
T  16889281 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatgtgaaatgccacc 16889195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 43480702 - 43480614
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacctt 98  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||  |||||||||||| || ||||||| ||||||    
T  43480702 aagaatatgttcttcacttaatctaatcatttaatccaactttcccatggtgtaaaaagattaacctttcccatgtgaaatgccacctt 43480614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 11998542 - 11998472
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||  ||||||||||||    
T  11998542 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcc 11998472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 11999080 - 11999166
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |||  |||||||||||| || ||||||| ||||    
T  11999080 aagaatatgttcttcacttcatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 11999166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 30115996 - 30116066
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  30115996 aagaatatattctttacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcc 30116066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 43591616 - 43591702
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||||| || |||||| | ||||||| ||| ||||||||||||| || ||||||| ||||    
T  43591616 aagaatatgttcttcacttaatctaatcattgactctaactttcccatggtgggaaataattaacctttcccatgtgaaatgacacc 43591702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 43481284 - 43481349
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaaccttt 78  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||    
T  43481284 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttt 43481349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 44062071 - 44062002
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttc 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||| | |||| |||||||||||    
T  44062071 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggttggaaagtattaacctttc 44062002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 38778240 - 38778172
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaaccttt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||  ||||||||||    
T  38778240 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaaccttt 38778172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 43591093 - 43591023
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||| |||||||||||||||||| ||||||| | ||||||| |||| ||||||||||||    
T  43591093 aagaatatgttcttcatttaatctaatcattgaattcaactttcccatggtgggaaaggattaacctttcc 43591023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 35237865 - 35237933
Alignment:
Q  11 agaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||| ||||||||||||    
T  35237865 agaatatgttcttcacttaatctaattattgaat-caacttttctatggtgggaaaggattaacctttcc 35237933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 4374995 - 4375078
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||| |||||||||||||||||||   |||||||||||  ||| | |||||| |||||||||| ||||    
T  4374995 aatatgttcttcacttaatccaatcattgaatccaactttctcatggtggaaaatgattcatctttcccatatgaaatgccacc 4375078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 16889828 - 16889895
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctt 77  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||  |||||||||    
T  16889828 aagaatatgttcttcacttaatctaataattgaatccaactttcccatggtgggaaatgattaacctt 16889895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 4374301 - 4374343
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4374301 aagaatatgttcttcacttaatctaatcattgaatccaacttt 4374343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 16879974 - 16879932
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16879974 aagaatatgttcttcacttaatctaatcattgaatccaacttt 16879932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 16880518 - 16880588
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||||||| ||||||   ||||||| |||| ||||| ||||||    
T  16880518 aagaatatgttcttcacttaatctaatcattgaatctaactttcacatggtgggaaaggattaatctttcc 16880588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 33113661 - 33113591
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||  ||||| ||||||    
T  33113661 aagaatatattcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaatctttcc 33113591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 40907684 - 40907615
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |  |||||| |||| ||||||||||||    
T  40907684 aagaatatgttcttcacttaatctaatcattgaat-caactttcccgtggtgggaaaggattaacctttcc 40907615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 39852803 - 39852872
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttc 79  Q
    |||||||| |||||||||||||||||| |||||||| |||||||  ||||||| |||| |||||||||||    
T  39852803 aagaatatattcttcacttaatctaataattgaatctaacttttttatggtgggaaaggattaacctttc 39852872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 7819097 - 7819139
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  7819097 aagaatatgttcttcacttaatctaatcattgaatctaacttt 7819139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 10806034 - 10805992
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  10806034 aagaatatgttcttcatttaatctaatcattgaatccaacttt 10805992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 10806437 - 10806518
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggt-ggaaaagaattaacctttcctatatgaaatg 91  Q
    |||||||||||||| ||||||| ||||||||||||| |||||| | ||||| ||||||| |||||||||||| || |||||||    
T  10806437 aagaatatgttctttacttaatttaatcattgaatcaaactttcccatggtaggaaaag-attaacctttcccatgtgaaatg 10806518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 2209092 - 2209050
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  2209092 aagaatatgttattcacttaatctaatcattgaatcgaacttt 2209050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 4373772 - 4373730
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  4373772 aagaatatgttcttcacttaatataatcattgaattcaacttt 4373730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 38778798 - 38778837
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  38778798 aatatattcttcacttaatctaatcattgaatacaacttt 38778837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 11351 - 11265
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| || ||||||| |||||    
T  11351 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaag-attaacctttcccatgtgaaatgccacct 11265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 15233 - 15323
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||| | || ||||||| ||||||||    
T  15233 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttttccatgtgaaatgccaccttaa 15323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 5523286 - 5523216
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  5523286 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtggaaaaggattaacctttcc 5523216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 5523846 - 5523932
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||  |||||||||||| || ||||||| ||||    
T  5523846 aagaatatgttcttcacttaatctaatcattgaatcaaactttccaatggtgggaaaagattaacctttcccatgtgaaatgccacc 5523932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 33668307 - 33668220
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||  |||||||||||| || ||||||| |||||    
T  33668307 aagaatatgttcttcacttaatttaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacct 33668220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 6032244 - 6032174
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| | || |||| |||| ||||||||||||    
T  6032244 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatagtgggaaaggattaacctttcc 6032174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 30610797 - 30610727
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||  ||||||||||||    
T  30610797 aagaatatgttcttcacttaatctaatcattgaatccaattttcccatggtggaaaatgattaacctttcc 30610727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 6032753 - 6032840
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||||||||||||||||||||||||||||||| ||||||   ||||||  ||| ||||||||||| | |||||||||| |||||    
T  6032753 aagaatatgttcttcacttaatctaatcattgaatctaactttctcatggtgagaaaaaattaaccttttccatatgaaatgccacct 6032840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 30611345 - 30611432
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||| |||||| ||||  || ||||||| |||||    
T  30611345 aagaatatgttcttcagttaatctaatcattgaatccaactttcccatggtgggaaaggattaacatttctcatgtgaaatgccacct 30611432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 12809155 - 12809085
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||| |||||||||| | || |||| |||| ||||||||||||    
T  12809155 aagaatatgttcttcacttaatctaatcattgcatccaactttcctatagtgggaaaggattaacctttcc 12809085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 13936640 - 13936726
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||| |||||||||||||||||| || |||||| | ||||||| |||| |||||||||||| || ||||||| ||||    
T  13936640 aagaatatgttctttacttaatctaatcattgactctaactttcccatggtgggaaaggattaacctttcccatgtgaaatggcacc 13936726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 31723919 - 31723833
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| | ||||| | |||| |||||||||||| |||| ||||| ||||    
T  31723919 aagaatatgttcttcacttaatctaatcattaaatccaaatttcccatggtaggaaaggattaacctttcccatataaaatgccacc 31723833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 12809702 - 12809783
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatg 91  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |   ||| |||| |||||||||||| || |||||||    
T  12809702 aagaatatgttcttcacttaatctaatcattgaatccaactttcccaccatgggaaaggattaacctttcccatgtgaaatg 12809783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 33668833 - 33668900
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||  |||||| |||||    
T  33668833 aatatattcttcacttaatctaatcattgaatccaacttttctatggtgggaaatgattaacatttcc 33668900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 13944376 - 13944298
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaa 88  Q
    |||||||||||||||| |||||||||||||||||| ||||||| | ||| ||| |||  ||||| |||||| |||||||    
T  13944376 aagaatatgttcttcatttaatctaatcattgaattcaactttcccatgatgggaaatgattaatctttcccatatgaa 13944298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 33648163 - 33648244
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatg 91  Q
    |||||||| |||||||||||||  ||||||||||||||| ||| | ||||||  |||||||| |||||||| || |||||||    
T  33648163 aagaatatattcttcacttaattcaatcattgaatccaattttcctatggtgtgaaagaattgacctttcccatgtgaaatg 33648244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 1403126 - 1403036
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcaccttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||| | || ||||||| ||||||||    
T  1403126 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttttccatgtgaaatgccaccttaa 1403036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 27817006 - 27817085
Alignment:
Q  12 gaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatg 91  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| || || |||||||    
T  27817006 gaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaaccttacccatgtgaaatg 27817085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 49534396 - 49534483
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||||| |||||    
T  49534396 aagaatatgtttttaacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacct 49534483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 6288204 - 6288290
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||  |||| |||||||||||| || ||||||| ||||    
T  6288204 aagaatatgttcttcacttaatctaatcattgaatccaacttctccatggtgagaaaggattaacctttcccatgtgaaatgccacc 6288290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 8560242 - 8560156
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    |||||||||||||||||||||||||||| ||||||||||| || | |||||||||||| |||||||||||| || ||||||| ||||    
T  8560242 aagaatatgttcttcacttaatctaatctttgaatccaacattcccatggtggaaaaggattaacctttcccatgtgaaatgccacc 8560156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 43368835 - 43368905
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||    
T  43368835 aagaatatgttcttcacttaatctaatcattgaatacaactttcccatggtgggaaagaattaacctttcc 43368905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 27797736 - 27797823
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||| || |||||| | || ||||||||| |||||||||||| || ||||||| |||||    
T  27797736 aagaatatgttcttcacttaatctaatcattgactctaactttcccatagtggaaaaggattaacctttcccatgtgaaatggcacct 27797823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 1403688 - 1403765
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaa 88  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||| ||||||||||||||| ||||    
T  1403688 aagaatatgttcttcacttaatctaatcattgaat-caactttcccatggtgggaaaggattaacctttcctatgtgaa 1403765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 8560743 - 8560812
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||    
T  8560743 aagaatatgttcttcacttaatctaatcattgaat-caacttttccatggtgggaaaggattaacctttcc 8560812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 42839548 - 42839618
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||| ||||||||||||    
T  42839548 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaggattaacctttcc 42839618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 49533829 - 49533751
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaa 88  Q
    ||||||||||||||||||||||||||||||||||||||||||| |  |||||| |||| ||||||||| ||||| ||||    
T  49533829 aagaatatgttcttcacttaatctaatcattgaatccaactttcccgtggtgggaaaggattaaccttccctatgtgaa 49533751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 51248483 - 51248553
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||| |||||||||||||    
T  51248483 aagaatatgttcttcacttaatctaattattgaatcaaacttttccatggtgggaaaaaattaacctttcc 51248553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 42839023 - 42838936
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    ||||||||||||||||||||||||||||||||| || |||||| | ||||||| |||| |||||||||| | || ||||||| |||||    
T  42839023 aagaatatgttcttcacttaatctaatcattgactctaactttcccatggtgggaaaggattaacctttaccatgtgaaatggcacct 42838936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 41563265 - 41563187
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaa 88  Q
    ||||||| |||||||| |||||||||| ||||||||||||||| | ||||| ||||||||||||| ||||| |||||||    
T  41563265 aagaatacgttcttcatttaatctaataattgaatccaactttcccatggtagaaaagaattaacatttcccatatgaa 41563187  T

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Target: chr1; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 52859788 - 52859858
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||| | |||| ||||||||||||    
T  52859788 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggttggaaaggattaacctttcc 52859858  T

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Target: chr1; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 27797203 - 27797135
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaaccttt 78  Q
    ||||||||||||||||||||||||||||||||||| |||| || | ||||||| |||| ||||||||||    
T  27797203 aagaatatgttcttcacttaatctaatcattgaattcaaccttcccatggtgggaaaggattaaccttt 27797135  T

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Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 42840316 - 42840383
Alignment:
Q  13 aatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||||||||||| ||||||| | || ||||||||  ||||||||||||    
T  42840316 aatatgttcttcacttaatctaatcattgaattcaactttcccatagtggaaaatgattaacctttcc 42840383  T

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Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 7219648 - 7219717
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | ||| ||| |||| ||||||||||||    
T  7219648 aagaatatgttcttcacttaatctaatcattgaatccaa-tttcccatgatgggaaaggattaacctttcc 7219717  T

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Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 42839787 - 42839717
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||||| |||||||| || |||||| | ||||||| |||| ||||||||||||    
T  42839787 aagaatatgttcttcacttaatctgatcattgactctaactttcccatggtgggaaaggattaacctttcc 42839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 43368276 - 43368206
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcc 80  Q
    |||||||||||||||||||||| ||||||||||||| ||| || | ||||||| |||| ||||||||||||    
T  43368276 aagaatatgttcttcacttaatttaatcattgaatctaacattcccatggtgggaaaggattaacctttcc 43368206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 48843962 - 48844004
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48843962 aagaatatgttcttcacttaatctaatcattgaatccaacttt 48844004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 27934295 - 27934358
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaac 74  Q
    ||||||||||||||| |||||||||||||||| |||||||||| | ||| |||||||||||||||    
T  27934295 aagaatatgttcttctcttaatctaatcattg-atccaactttcccatgttggaaaagaattaac 27934358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 37725465 - 37725421
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttc 54  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  37725465 aagaatatgttcttcacttaatctaatgattgaatccaacttttc 37725421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 48369568 - 48369512
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaa 66  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||    
T  48369568 aagaatatgttcttcacttaatccaatcattgaatccaactttcctatagtggaaaa 48369512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 48843666 - 48843596
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtg-gaaaagaattaacctttcc 80  Q
    ||||||||||| |||||||||| |||||||||||||||||||| | |||||| ||||||| |||||||||||    
T  48843666 aagaatatgttattcacttaatataatcattgaatccaactttcctatggtgtgaaaaga-ttaacctttcc 48843596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 7782691 - 7782777
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacc 96  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| | ||||| | |||| |||  ||||||| || ||||||| ||||    
T  7782691 aagaatatgttcttcacttgatccaatcattgaatccaactttcccatggtaggaaaggattggcctttcccatgtgaaatgccacc 7782777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 41563792 - 41563833
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaactt 51  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  41563792 aagaatatgttcttcacttaatctaataattgaatccaactt 41563833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 51247914 - 51247870
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttc 54  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  51247914 aagaatatattcttcacttaatctaatcattgaatccaatttttc 51247870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 6287706 - 6287672
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaat 44  Q
    |||||||||||||||||||||||||||||||||||    
T  6287706 aagaatatgttcttcacttaatctaatcattgaat 6287672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 7219094 - 7219052
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  7219094 aagaatatattcttcatttaatctaatcattgaatccaacttt 7219052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 37725672 - 37725708
Alignment:
Q  12 gaatatgttcttcacttaatctaatcattgaatccaa 48  Q
    |||||| ||||||||||||||||||||||||||||||    
T  37725672 gaatatattcttcacttaatctaatcattgaatccaa 37725708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 52859235 - 52859193
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttt 52  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||    
T  52859235 aagaatatgttattcatttaatctaatcattgaatctaacttt 52859193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 1571 - 1520
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtg 61  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  1571 aagaatatgttattcacttaatctaatcattgaatccaacttttccatggtg 1520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 11784 - 11871
Alignment:
Q  10 aagaatatgttcttcacttaatctaatcattgaatccaacttttcaatggtggaaaagaattaacctttcctatatgaaatgtcacct 97  Q
    |||||||||||||||||||||||| |||||||| || |||||| | ||||||| |||| |||||||||| | || ||||||| |||||    
T  11784 aagaatatgttcttcacttaatctgatcattgactctaactttcccatggtgggaaaggattaacctttaccatgtgaaatggcacct 11871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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