View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_39 (Length: 237)
Name: NF17125_low_39
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2145134 - 2145355
Alignment:
| Q |
1 |
agatcatgatttcgcatataatcacaaacaacatacacatttccgattaactaagcacttagttttactacaatttttcattcaaaacaccacgatactg |
100 |
Q |
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| T |
2145134 |
agatcatgatttcgcatataatcacaaacaacatacacatttccgattaactaagcacttagttttactacaatttttcattcaaaacaccacgatactg |
2145233 |
T |
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| Q |
101 |
agatcacgatttcgcatataatcataaacatttccaattaactaagcacttaaatttgctacactctattcaacatcaaacaacgaattttatcaaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2145234 |
agatcacgatttcgcatataatcataaacatttccgattaactaagcacttaaattttctacactctattcaacatcaaacaacgaattttatcaaaatt |
2145333 |
T |
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| Q |
201 |
ctcaaaatttcaatattcatac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2145334 |
ctcaaaatttcaatattcatac |
2145355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 2144617 - 2144680
Alignment:
| Q |
3 |
atcatgatttcgcatataatcacaaacaacatacacatttccgattaactaagcacttagtttt |
66 |
Q |
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|||||||||| ||||||||||| |||||||| | ||||||| ||||||||||||||||| |||| |
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| T |
2144617 |
atcatgattttgcatataatcataaacaacacagacatttctgattaactaagcacttaatttt |
2144680 |
T |
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