View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_4 (Length: 510)
Name: NF17125_low_4
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 9073320 - 9073808
Alignment:
| Q |
1 |
ctagtaaattgcttaaaat-atatttttctagatcatgattattcagatgtacatcaagtattagataattattacaaaaatcgaaggcagacgggcaat |
99 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| |||||||| |
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| T |
9073320 |
ctagtaaattgcttaaaattatatttttctagatcatgattattcagatgtacatcaagcattaaacaattattacaaaaatcgaaggcaggcgggcaat |
9073419 |
T |
|
| Q |
100 |
aagctgcgctagtaatcctttttggatgacataaccgatatcataaatacaacgtccatagacatagaagacacgacattgttatgcatgaccttatgaa |
199 |
Q |
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|||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
9073420 |
aagctgcgctggtaatcctttctggatgacataaccaatatcataaatacaacgtccatagacatagaagacacgacattattatgcatgaccttacgaa |
9073519 |
T |
|
| Q |
200 |
ctctttttggatgtacatcttataatagattgtctattgattatgttaatttattcagttagggatggaataaaaaacttcaaattggaattaattaaga |
299 |
Q |
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| T |
9073520 |
ctctttttggatgtacatcttataatagattgtctattgattatgttaatttattcagttagggatgggataaaaaacttcaaattggaattaattaaga |
9073619 |
T |
|
| Q |
300 |
ttttaggtgaacaaagacaaaggaaagattttattacctgctcaattccaatttgaataggaactgttagactctgttgttgagcttgcatcttttgatg |
399 |
Q |
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| T |
9073620 |
ttttaggtgaacaaagacaaaggaaagattttattacctgctcaattccaatttgaataggaactgttagactctgttgttgagcttgcatcttttgatg |
9073719 |
T |
|
| Q |
400 |
tttctcttggtacctttcttgttgtaaagcttgtgaaagagaagcactagccatagatcccatttgatgatacatatcactctcttgag |
488 |
Q |
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| T |
9073720 |
tttctcttggtacctttcttgttgtaaagcttgtgaaagagaagcactagccatagatcccatttgatgataaatatcactctcttgag |
9073808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 27521411 - 27521471
Alignment:
| Q |
143 |
taaatacaacgtccatagacatagaagacacgacattgttatgcatgaccttatgaactct |
203 |
Q |
| |
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|||| ||||| | ||||||| ||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
27521411 |
taaacacaacattcatagacttaggagacatgacattgttatgcatgaccttttgaactct |
27521471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 982906 - 982949
Alignment:
| Q |
160 |
gacatagaagacacgacattgttatgcatgaccttatgaactct |
203 |
Q |
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| T |
982906 |
gacatagaagacatgacattgatatgcatgaccttttgaactct |
982949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 32312857 - 32312816
Alignment:
| Q |
164 |
tagaagacacgacattgttatgcatgaccttatgaactcttt |
205 |
Q |
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| T |
32312857 |
tagaagacactacattgttatgcatgaccttttgaactcttt |
32312816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 13413263 - 13413351
Alignment:
| Q |
116 |
cctttttggatgacataaccgata-tcataaatacaacgtccatagacatagaagacacgacattgttatgcatgaccttatgaactct |
203 |
Q |
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|||||||||||| || |||| || ||||||| ||||| | ||| ||| ||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
13413263 |
cctttttggatggcaaaaccaattctcataaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactct |
13413351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 17344578 - 17344638
Alignment:
| Q |
143 |
taaatacaacgtccatagacatagaagacacgacattgttatgcatgaccttatgaactct |
203 |
Q |
| |
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| T |
17344578 |
taaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactct |
17344638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 32115658 - 32115720
Alignment:
| Q |
143 |
taaatacaacgtccatagacatagaagacacgacattgttatgcatgaccttatgaactcttt |
205 |
Q |
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| T |
32115658 |
taaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactcttt |
32115720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 38145996 - 38146056
Alignment:
| Q |
143 |
taaatacaacgtccatagacatagaagacacgacattgttatgcatgaccttatgaactct |
203 |
Q |
| |
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|||| ||||||| ||| ||| ||| ||||| ||||||||||||||||||| | |||||||| |
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| T |
38145996 |
taaacacaacgttcatggacctaggagacatgacattgttatgcatgaccctttgaactct |
38146056 |
T |
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