View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_40 (Length: 237)
Name: NF17125_low_40
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 6194242 - 6194461
Alignment:
| Q |
1 |
tagaattaactttacattcttctcctttgccatcaccacaatttaagaaagtggatcttacccttttcaattctctccaaaaaatcaaatctttgcaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6194242 |
tagaattaactttacattcttctcctttgccatcaccacaatttaagaaagtggatcttacccttttcaattctctccaaaaaatcaaatctttgcatgt |
6194341 |
T |
|
| Q |
101 |
ccattttgctctttgtctaagattaaggttgtattagtcaaacattgtctcnnnnnnnntgtcttttttcttgtctcataccctctttgtgttccttttg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6194342 |
ccattttgctctttgtctaagattaaggttgtattagtcaaacattgtctcaaaaaaaatgtcttttttcttgtctcatatcctctttgtgttccttttg |
6194441 |
T |
|
| Q |
201 |
tttacaagcaatgtacaaca |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
6194442 |
tttacaagcaatgtacaaca |
6194461 |
T |
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