View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_41 (Length: 235)
Name: NF17125_low_41
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 10888204 - 10887994
Alignment:
| Q |
11 |
caaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttc |
110 |
Q |
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| T |
10888204 |
caaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttc |
10888105 |
T |
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| Q |
111 |
ttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||| | |||||||||||||||||||| || |
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| T |
10888104 |
ttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgt |
10888005 |
T |
|
| Q |
211 |
ctaccttattg |
221 |
Q |
| |
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||||||||||| |
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| T |
10888004 |
ctaccttattg |
10887994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 10866214 - 10866378
Alignment:
| Q |
55 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
154 |
Q |
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|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10866214 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10866313 |
T |
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| Q |
155 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat |
219 |
Q |
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| T |
10866314 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat |
10866378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 10874091 - 10873927
Alignment:
| Q |
55 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
154 |
Q |
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|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10874091 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10873992 |
T |
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| Q |
155 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat |
219 |
Q |
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| T |
10873991 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat |
10873927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 10879162 - 10878998
Alignment:
| Q |
55 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
154 |
Q |
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| T |
10879162 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10879063 |
T |
|
| Q |
155 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat |
219 |
Q |
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| T |
10879062 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat |
10878998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 10884233 - 10884069
Alignment:
| Q |
55 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
154 |
Q |
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|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10884233 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10884134 |
T |
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| Q |
155 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat |
219 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884133 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat |
10884069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 39675780 - 39675950
Alignment:
| Q |
48 |
cttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctac |
147 |
Q |
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|||||||||| || ||||||||| || ||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39675780 |
cttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctac |
39675879 |
T |
|
| Q |
148 |
acctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctacctta |
218 |
Q |
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||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||| | || ||||||||| |
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| T |
39675880 |
acctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctacctta |
39675950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 10045775 - 10045944
Alignment:
| Q |
50 |
tcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacac |
149 |
Q |
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| T |
10045775 |
tcttcactctacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacac |
10045874 |
T |
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| Q |
150 |
ctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttat |
219 |
Q |
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| T |
10045875 |
ctcttcatgttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttat |
10045944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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