View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_low_44 (Length: 229)

Name: NF17125_low_44
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17125_low_44
NF17125_low_44
[»] chr4 (1 HSPs)
chr4 (1-221)||(21835708-21835928)
[»] chr6 (4 HSPs)
chr6 (1-116)||(6411636-6411751)
chr6 (15-82)||(392406-392472)
chr6 (128-190)||(6414342-6414404)
chr6 (1-33)||(6590453-6590485)
[»] chr8 (1 HSPs)
chr8 (3-79)||(36768829-36768905)
[»] chr5 (2 HSPs)
chr5 (1-116)||(20480454-20480570)
chr5 (27-116)||(28524331-28524421)
[»] chr3 (1 HSPs)
chr3 (4-63)||(13472898-13472957)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21835708 - 21835928
Alignment:
Q  1 aaagaaatttaagcaagtttggaattaaagaaatagttagaactggaaaggttccaaagctcatttgagtacctaagaattttgtctattttgtccactt 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21835708 aaagaaatttaagcaagtttggaattaaagaaatagctagaactggaaagattccaaagctcatttgagtacctaagaattttgtctattttgtccactt 21835807  T
Q  101 tctcattcattgttttattactgttggattaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacctcattgttactctttattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21835808 tctcattcattgttttattactgttggattaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacctcattgttactctttattcta 21835907  T
Q  201 attgctgaggttacctatgct 221  Q
    |||||||||||||||||||||    
T  21835908 attgctgaggttacctatgct 21835928  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 6411751 - 6411636
Alignment:
Q  1 aaagaaatttaagcaagtttggaattaaagaaatagttagaactggaaaggttccaaagctcatttgagtacctaagaattttgtctattttgtccactt 100  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| || |||||  ||||| ||| | |||||||| || ||    
T  6411751 aaagaaatataagcaagtttggaattaaagaaatagctagaactagaaatgttccaaagctcaatttagtacagaagaaatttctatattttgttcattt 6411652  T
Q  101 tctcattcattgtttt 116  Q
    ||||||||||||||||    
T  6411651 tctcattcattgtttt 6411636  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 392472 - 392406
Alignment:
Q  15 aagtttggaattaaagaaatagttagaactggaaaggttccaaagctcatttgagtacctaagaattt 82  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||| ||  ||||| |||||||||||    
T  392472 aagtttgaaattaaagaaatagctagaa-tggaaaggttccaaagcacaactgagtgcctaagaattt 392406  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 6414404 - 6414342
Alignment:
Q  128 attaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacctcattgttact 190  Q
    ||||||||||||||||||||||| || ||||||  || |||  |||||||||| |||||||||    
T  6414404 attaatgtgtagttttccaaaatgatttgttgaccggaaaactttattaacctaattgttact 6414342  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6590453 - 6590485
Alignment:
Q  1 aaagaaatttaagcaagtttggaattaaagaaa 33  Q
    ||||||||||||||| |||||||||||||||||    
T  6590453 aaagaaatttaagcatgtttggaattaaagaaa 6590485  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 36768829 - 36768905
Alignment:
Q  3 agaaatttaagcaagtttggaattaaagaaatagttagaactggaaaggttccaaagctcatttgagtacctaagaa 79  Q
    ||||||||  |||||||||||||||||||||||| |||||| |||||||||| ||||||||  ||||||||||||||    
T  36768829 agaaatttcggcaagtttggaattaaagaaatagctagaaccggaaaggttcgaaagctcaactgagtacctaagaa 36768905  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 20480454 - 20480570
Alignment:
Q  1 aaagaaatttaagcaagtttggaattaaagaaatagttagaac-tggaaaggttccaaagctcatttgagtacctaagaattttgtctattttgtccact 99  Q
    |||||||||||||||||| ||| ||||| ||||||  |||||| ||||| |||| ||||||||| ||||||| | ||||||||| | |||||| | ||||    
T  20480454 aaagaaatttaagcaagtatggcattaaggaaataagtagaacttggaagggttgcaaagctcagttgagtatcaaagaattttttttattttattcact 20480553  T
Q  100 ttctcattcattgtttt 116  Q
    |||||| ||||||||||    
T  20480554 ttctcaatcattgtttt 20480570  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 28524421 - 28524331
Alignment:
Q  27 aaagaaatagttagaact-ggaaaggttccaaagctcatttgagtacctaagaattttgtctattttgtccactttctcattcattgtttt 116  Q
    |||||||||| ||||||| |||||||||||| || | | |||||||   ||||||||| | |||||||| |||||| ||||||||||||||    
T  28524421 aaagaaatagctagaacttggaaaggttccagagtttagttgagtataaaagaattttctttattttgttcactttttcattcattgtttt 28524331  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 13472898 - 13472957
Alignment:
Q  4 gaaatttaagcaagtttggaattaaagaaatagttagaactggaaaggttccaaagctca 63  Q
    ||||| ||||||||||| ||||| |||||  || ||||||||||||||| ||||||||||    
T  13472898 gaaatctaagcaagttttgaattgaagaataagctagaactggaaaggtcccaaagctca 13472957  T

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