View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_47 (Length: 217)
Name: NF17125_low_47
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 8537572 - 8537777
Alignment:
| Q |
2 |
cactcaaacgacactgtttcatcactctccggctacaacaatgggcaactgaagaagaacaacaaaaactctcacgtctagtaaaaccct-agtccacca |
100 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| | ||||||| |
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| T |
8537572 |
cactcaaatgacactgtttcatcactctctggctacaacaatgggcgactgaagaagaacaacaaaaactctcaggtctagtaaaagccttaatccacca |
8537671 |
T |
|
| Q |
101 |
tcacccccgactccgccgccgtcgccgattccatcaaacaccgtatctccactgatggtcgttcctctgaatatcgtaaatccgccgctaaattgcatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
8537672 |
tcacccccgactccgccgccgtcgccgattccatcgaacgttgtatctccaccgatggtcattcctctgaatatcgtaaatccgccgctaaatcgcatga |
8537771 |
T |
|
| Q |
201 |
cccttt |
206 |
Q |
| |
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|||||| |
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| T |
8537772 |
cccttt |
8537777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 37200672 - 37200603
Alignment:
| Q |
98 |
ccatcacccccgactccgccgccgtcgccgattccatcaaacaccgtatctccactgatggtcgttcctc |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||| |
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| T |
37200672 |
ccatcacccccgactccgccgccgtcgccgattccatcaaacgccgtctcgccaccgatggtcgttcctc |
37200603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 37200881 - 37200786
Alignment:
| Q |
7 |
aaacgacactgtttcatc--actctccggctacaacaatgggcaactgaagaagaacaacaaaaactctcacgtctagt-aaaaccctagtccacca |
100 |
Q |
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||||||||| |||||||| |||||||||| ||||||||| | || ||||||||||||||||||||| || |||||| ||| ||||||||||||| |
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| T |
37200881 |
aaacgacaccgtttcatctgactctccggcggcaacaatggacgac-gaagaagaacaacaaaaactcccagatctagtgaaagccctagtccacca |
37200786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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