View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_48 (Length: 208)
Name: NF17125_low_48
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 37146713 - 37146913
Alignment:
| Q |
8 |
cgaagaaaataacactagtagatcaacccctagttcatcccaacaaacaaaccgcggtcatgaggacaatccaacacactcgcgtatgggagcgaaacca |
107 |
Q |
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| T |
37146713 |
cgaataaaataacactagtagatcaacccctagttcatcccaacaaacaaaccgcggtcatgaggacaatccaacacactcgcgtatgggagcgaaacca |
37146812 |
T |
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| Q |
108 |
gattgcaaaagagagatgatttgaaaacatttgaagcactaaccagagttcaaaaaactggcgtatggacataccgtcaacacagaacgaaaccaagaac |
207 |
Q |
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| T |
37146813 |
gattgcaaaagagagatgatttgaaaacatttgaagcactaaccagagttcaaaaaactggcgtatggacataccgtcgacacagaacgaaaccaagaac |
37146912 |
T |
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| Q |
208 |
c |
208 |
Q |
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| T |
37146913 |
c |
37146913 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 25710821 - 25710777
Alignment:
| Q |
73 |
acaatccaacacactcgcgtatgggagcgaaaccagattgcaaaa |
117 |
Q |
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| T |
25710821 |
acaatccaacacacccgcgtacgggagcgaaaccaagttgcaaaa |
25710777 |
T |
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