View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_low_6 (Length: 470)

Name: NF17125_low_6
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17125_low_6
NF17125_low_6
[»] chr5 (2 HSPs)
chr5 (18-405)||(39184666-39185053)
chr5 (19-230)||(8730292-8730501)
[»] chr1 (4 HSPs)
chr1 (26-241)||(42373538-42373752)
chr1 (18-373)||(17032737-17033100)
chr1 (19-245)||(19597952-19598180)
chr1 (175-243)||(41919898-41919966)
[»] chr2 (4 HSPs)
chr2 (19-230)||(25505406-25505615)
chr2 (19-235)||(22885907-22886124)
chr2 (124-250)||(31902910-31903036)
chr2 (124-279)||(39339357-39339512)
[»] chr4 (4 HSPs)
chr4 (132-249)||(16501182-16501300)
chr4 (33-235)||(46699364-46699566)
chr4 (175-243)||(30963879-30963947)
chr4 (63-118)||(12295557-12295612)
[»] chr7 (6 HSPs)
chr7 (83-243)||(37792747-37792908)
chr7 (181-243)||(38484991-38485053)
chr7 (124-279)||(47326396-47326551)
chr7 (181-250)||(3420242-3420311)
chr7 (132-235)||(12480298-12480402)
chr7 (175-243)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (20-207)||(25595029-25595217)
chr3 (70-235)||(5555991-5556158)
chr3 (124-245)||(17501759-17501880)
chr3 (134-232)||(1653452-1653550)
[»] chr8 (4 HSPs)
chr8 (96-248)||(9519052-9519205)
chr8 (181-243)||(34866640-34866702)
chr8 (156-235)||(10551752-10551832)
chr8 (175-243)||(34389590-34389658)
[»] chr6 (1 HSPs)
chr6 (132-243)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 39184666 - 39185053
Alignment:
Q  18 acaagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 117  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39184666 acaagacaacaaagttgaaagacttcaaggaaagcggccacaacgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 39184765  T
Q  118 gccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacga 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  39184766 gccaaaactacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaagacgaaacacaactacaaaacataggcaacga 39184865  T
Q  218 cgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaacaaccaaccccattaa 317  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  39184866 cgccagtttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatatgtcgccggagtaaacaaccaaccccatgaa 39184965  T
Q  318 cctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagtaccaaacctgaaagcatgtgagacacccagag 405  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  39184966 cctgcggaactgaccgaatggaagctgatctcagcaacaaaatcaccaaaaccagtaccgaacgtgaaagcacgtgagacacccagag 39185053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 8730501 - 8730292
Alignment:
Q  19 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 118  Q
    |||||||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | ||||||||||||    
T  8730501 caagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagag 8730402  T
Q  119 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgac 218  Q
     || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| ||||    
T  8730401 acagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgac 8730304  T
Q  219 gccagtttgaag 230  Q
    |||||| |||||    
T  8730303 gccagtctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 26 - 241
Target Start/End: Complemental strand, 42373752 - 42373538
Alignment:
Q  26 acaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaac 125  Q
    ||||||||||| | ||||||||||| | || ||| ||||||||||||||||||||||||||||   |||||||||||||| |||| ||||||| ||||||    
T  42373752 acaaagttgaaggtctccaaggaaatcagcaacatcgccatagcattccgaagaagcagccacagtgaatatacccacaa-ccaaagatagagacaaaac 42373654  T
Q  126 tacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtt 225  Q
    ||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||||||| ||||||| |||||||||| || |||    
T  42373653 tacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaaacacaacttcaaaacacgggcaacgacaccggtt 42373554  T
Q  226 tgaagcggaatcacaa 241  Q
    ||||||||||||||||    
T  42373553 tgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 17033100 - 17032737
Alignment:
Q  18 acaagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 117  Q
    ||||||||||||||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||||||  ||||| ||||||||  || |||||||    
T  17033100 acaagacaacaaagttgaaggtctctaaggaaagcagccacatcgccatagcattccgaagaagcagccacgttgaataaacccacaaatcagcgataga 17033001  T
Q  118 g-ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaagacgaaacacaactac-aaaacatgggc 212  Q
    | | |||||||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| ||||||||||||  |||| || ||||||  ||     
T  17033000 gacaaaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaagacgaaatccaacaacaaaaacacaggt 17032901  T
Q  213 aacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaac---aaccaac 309  Q
    |  ||| || || |||||| |||||||||||   |||| | |||||  || |||||||||| |||| | || |  |||| ||||||||||   ||||||     
T  17032900 agtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgacaaggaggagacttccgtcgtcggagtaaacaaaaaccaag 17032801  T
Q  310 cccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagt 373  Q
     |||| |||||||  |||||||  |||||| ||| ||||||||||||| |  ||||||||||||    
T  17032800 tccatgaacctgcaaaactgactgaatcgacgccaatctcagcaacaacacaaccaaaaccagt 17032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 19598180 - 19597952
Alignment:
Q  19 caagacaacaaagttgaaagactccaaggaaagcggcca-caccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 117  Q
    ||||||||| | ||| || | ||||||||||||| || | || | ||||||||||| |||||| || |||| |||||||||| ||||| ||| ||| |||    
T  19598180 caagacaacgaggtttaatgtctccaaggaaagcagcaaacatcaccatagcattctgaagaatcaaccacaaagaatatactcacaaaccatcgaaaga 19598081  T
Q  118 gccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaac 215  Q
    | ||||  ||||||  ||||||| |||| |||||||| ||| ||||||| |||| ||| | | | ||||||| ||||| |||| ||| |||| |||||||    
T  19598080 gacaaaggctacgcctccaaaccacctcgccaagaaa-caggcagcaacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaac 19597982  T
Q  216 gacgccagtttgaagcggaatcacaaccta 245  Q
    |||||| || ||||| |||| |||||||||    
T  19597981 gacgccggtctgaagtggaaacacaaccta 19597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  175 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 243  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 25505406 - 25505615
Alignment:
Q  19 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 118  Q
    |||||||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | ||||||||||||    
T  25505406 caagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagag 25505505  T
Q  119 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgac 218  Q
     || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| ||||    
T  25505506 acagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgac 25505603  T
Q  219 gccagtttgaag 230  Q
    |||||| |||||    
T  25505604 gccagtctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 22885907 - 22886124
Alignment:
Q  19 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 118  Q
    |||||||||||  ||||||| ||| ||||||||| |  ||| |||| ||||||| ||||||||||||||| | |||||||||||||| | |  |||||||    
T  22885907 caagacaacaagattgaaagtctctaaggaaagcaggaacatcgccttagcatttcgaagaagcagccacaacgaatatacccacaaactagtgatagag 22886006  T
Q  119 cca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacg 216  Q
      | |||| |||| |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | ||    
T  22886007 atagaaaccacgccgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcg 22886105  T
Q  217 acgccagtttgaagcggaa 235  Q
    |||||||| ||||||||||    
T  22886106 acgccagtctgaagcggaa 22886124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  124 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 222  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  223 gtttgaagcggaatcacaacctaaatca 250  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  124 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 222  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  223 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 279  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  132 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 230  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  231 cggaatcacaacctaaatc 249  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 46699364 - 46699566
Alignment:
Q  33 tgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagcca-aaactacgct 131  Q
    |||||| ||| ||||||||| || ||| | ||||| ||||||||||||||||||| |  |||| ||||||||| ||| ||||| ||  | |||||||||     
T  46699364 tgaaagtctcgaaggaaagcagcaacatcaccataacattccgaagaagcagccatggtgaatttacccacaaaccagcgataaagatataaactacgcc 46699463  T
Q  132 gccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 231  Q
    |||||||| |||||||||| | |||| || ||||  || ||| ||| ||||||||| |||   |||| |||| ||| ||||| |||||||  ||||||||    
T  46699464 gccaaaccacctcaccaag-acacaggcatcaaccaaacacagatcaataggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagc 46699562  T
Q  232 ggaa 235  Q
    ||||    
T  46699563 ggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  175 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 243  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 12295612 - 12295557
Alignment:
Q  63 ccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 118  Q
    ||||||||||| |||||||||||||||  |||||||||||||| ||| | ||||||    
T  12295612 ccatagcattctgaagaagcagccacggtgaatatacccacaaaccatcaatagag 12295557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 243
Target Start/End: Complemental strand, 37792908 - 37792747
Alignment:
Q  83 agccacgaagaatatacccacaagccaacgatagagcca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctat 180  Q
    |||||||| ||||| |||||||| ||||||| |||| || ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| |     
T  37792908 agccacgatgaataaacccacaaaccaacgacagagacagaaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaag 37792810  T
Q  181 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 243  Q
    || |||| ||||| ||||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792809 agaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  181 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 243  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  124 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 222  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  223 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 279  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  181 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 250  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  132 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 229  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  230 gcggaa 235  Q
    | ||||    
T  12480303 gtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  175 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 243  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 25595029 - 25595217
Alignment:
Q  20 aagacaacaaagttgaaagactccaa-ggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 118  Q
    |||||| | ||| |||||| |||||| ||||||| || ||| |||||| || |||| || | |||||||||   || ||||||| || | | ||||||||    
T  25595029 aagacagcgaagatgaaagtctccaaaggaaagcagcaacatcgccattgccttccaaaaatgcagccacggttaaaatacccataaacgagcgatagag 25595128  T
Q  119 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 207  Q
     | |||||||| |||||||||||||||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595129 acgaaactacgttgccaaaccgcctcaccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 5556158 - 5555991
Alignment:
Q  70 attccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa 169  Q
    |||||||||||||| |||    |||||||||||||| ||| ||| |||| |||||| | || ||| ||||||| ||||| |||||||  |||||||||||    
T  5556158 attccgaagaagcaaccatagtgaatatacccacaaaccagcgacagagacaaaacaatgcagcctaaccgccacaccatgaaaacaagcagcaacacaa 5556059  T
Q  170 a-acatatcta-taggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 235  Q
    | ||||||||| |  ||||||||| | |||| | | |||| ||||| ||||||| || ||||||||||    
T  5556058 acacatatctattttgaagacgaagcccaacaaaagaacacgggcagcgacgccggtctgaagcggaa 5555991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  124 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 222  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  223 gtttgaagcggaatcacaaccta 245  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  134 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 231  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 248
Target Start/End: Complemental strand, 9519205 - 9519052
Alignment:
Q  96 atacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaac 193  Q
    |||||||||| ||| |||||| | ||||| |||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || ||||||||||    
T  9519205 atacccacaaaccagcgatagggacaaaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaac 9519107  T
Q  194 acaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 248  Q
     |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519106 ccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  181 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 243  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  156 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 235  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  175 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 243  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  132 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 230  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  231 cggaatcacaacc 243  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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